View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1243_low_55 (Length: 341)
Name: NF1243_low_55
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 91 - 296
Target Start/End: Complemental strand, 3000539 - 3000338
Alignment:
| Q |
91 |
tcaagagcaacaccgataaacttatcgcgaataccattcaacgaagcaagcctaatattaacttcattaacctaactctcatacatattagctacatata |
190 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3000539 |
tcaagagcaacaccgataaacttatcgtgaataccattcaacgaagcaagcctaatattaacttcattaaccaaactctcatacatattagctacata-- |
3000442 |
T |
|
| Q |
191 |
tacatcaaaggcaagcgtaaattctggtctcattcataccgaatctctcccgtcctcctcttgttcaatttatcttgatcaccttaatcaacatatgaat |
290 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3000441 |
--catcaaaggcaagcataaattccggtctcattcataccgaatctctctcgtcctcctcttgttcaatttatcttgatcaccttaatcaacatctgaat |
3000344 |
T |
|
| Q |
291 |
ctacca |
296 |
Q |
| |
|
|||||| |
|
|
| T |
3000343 |
ctacca |
3000338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 2999418 - 2999378
Alignment:
| Q |
293 |
accaactgactactaaactcctagctctacatcttcatctc |
333 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2999418 |
accaactgactactaaactcgtagctctacatcttcatctc |
2999378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 148 - 296
Target Start/End: Original strand, 14895679 - 14895823
Alignment:
| Q |
148 |
ttaacttcattaacctaactctcatacatattagctacatatatacatcaaaggcaagcgtaaattctggtctcattcataccgaatctctcccgtcctc |
247 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||| ||||||||| |||| || |
|
|
| T |
14895679 |
ttaacttcattaaccaaactctcatacatattagctacata----catcaaaggcaaggcgaaattggggtctccttcatactgaatctctctcgtcttc |
14895774 |
T |
|
| Q |
248 |
ctcttgttcaatttatcttgatcaccttaatcaacatatgaatctacca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14895775 |
ctcttgttcaatttatcttgatcaccttaatcaacattggaatctacca |
14895823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 14895485 - 14895527
Alignment:
| Q |
93 |
aagagcaacaccgataaacttatcgcgaataccattcaacgaa |
135 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
14895485 |
aagagcaacactgatagacttatcacgaataccattcaacgaa |
14895527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University