View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_59 (Length: 325)

Name: NF1243_low_59
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_59
NF1243_low_59
[»] chr8 (14 HSPs)
chr8 (112-323)||(23176246-23176456)
chr8 (84-150)||(23176455-23176521)
chr8 (84-145)||(4108588-4108649)
chr8 (84-142)||(28220709-28220767)
chr8 (85-145)||(30650908-30650968)
chr8 (85-145)||(7291034-7291094)
chr8 (84-142)||(18756343-18756401)
chr8 (88-137)||(3038723-3038772)
chr8 (85-124)||(3859360-3859399)
chr8 (107-145)||(1205304-1205342)
chr8 (107-145)||(8803591-8803629)
chr8 (85-126)||(34686090-34686131)
chr8 (85-118)||(38110995-38111028)
chr8 (98-130)||(5018555-5018587)
[»] chr7 (11 HSPs)
chr7 (85-142)||(4902635-4902692)
chr7 (85-142)||(23402048-23402105)
chr7 (84-137)||(49002538-49002591)
chr7 (85-145)||(7743245-7743305)
chr7 (85-145)||(22954986-22955046)
chr7 (85-123)||(37853990-37854028)
chr7 (85-142)||(4618431-4618488)
chr7 (107-145)||(4583272-4583310)
chr7 (107-145)||(12390419-12390457)
chr7 (157-186)||(121265-121294)
chr7 (85-145)||(10674930-10674990)
[»] chr4 (9 HSPs)
chr4 (84-145)||(2708204-2708265)
chr4 (84-145)||(9743901-9743962)
chr4 (85-137)||(9409539-9409591)
chr4 (85-137)||(17612649-17612701)
chr4 (96-135)||(20096984-20097023)
chr4 (98-137)||(51960017-51960056)
chr4 (107-145)||(6864413-6864451)
chr4 (107-145)||(32592462-32592500)
chr4 (85-126)||(28292387-28292428)
[»] chr3 (15 HSPs)
chr3 (84-145)||(7758108-7758169)
chr3 (84-144)||(31706494-31706554)
chr3 (85-137)||(40640311-40640364)
chr3 (85-137)||(32180432-32180484)
chr3 (85-145)||(47930338-47930400)
chr3 (85-131)||(7568413-7568459)
chr3 (87-135)||(19606596-19606645)
chr3 (85-145)||(49359301-49359362)
chr3 (85-137)||(26000847-26000899)
chr3 (85-133)||(38392313-38392361)
chr3 (86-126)||(42664014-42664054)
chr3 (98-145)||(23165295-23165342)
chr3 (102-145)||(53811438-53811481)
chr3 (107-145)||(26941029-26941067)
chr3 (87-137)||(51878427-51878476)
[»] chr6 (8 HSPs)
chr6 (85-145)||(6613666-6613726)
chr6 (84-145)||(11083831-11083892)
chr6 (84-137)||(4104330-4104383)
chr6 (85-145)||(19632064-19632124)
chr6 (84-135)||(30341530-30341581)
chr6 (103-145)||(21016735-21016777)
chr6 (92-145)||(26301595-26301648)
chr6 (85-126)||(24661704-24661744)
[»] chr2 (17 HSPs)
chr2 (84-135)||(19073666-19073717)
chr2 (84-145)||(41713475-41713537)
chr2 (84-145)||(19093768-19093829)
chr2 (89-137)||(17244789-17244837)
chr2 (85-145)||(6178089-6178149)
chr2 (85-145)||(18514405-18514465)
chr2 (85-145)||(39788284-39788343)
chr2 (107-145)||(4167300-4167338)
chr2 (85-122)||(18779103-18779140)
chr2 (84-125)||(34441573-34441614)
chr2 (84-116)||(18059064-18059096)
chr2 (89-137)||(38249838-38249885)
chr2 (85-144)||(15651471-15651530)
chr2 (107-145)||(11366167-11366205)
chr2 (107-145)||(43648032-43648070)
chr2 (89-145)||(42005696-42005752)
chr2 (85-137)||(18947291-18947343)
[»] chr1 (10 HSPs)
chr1 (87-145)||(16127834-16127891)
chr1 (85-142)||(16135638-16135695)
chr1 (85-145)||(4146693-4146753)
chr1 (85-145)||(47555070-47555130)
chr1 (85-142)||(43579562-43579619)
chr1 (85-145)||(5500668-5500728)
chr1 (84-143)||(31804770-31804829)
chr1 (84-145)||(25943512-25943571)
chr1 (85-145)||(10598200-10598260)
chr1 (98-130)||(42663251-42663283)
[»] chr5 (14 HSPs)
chr5 (85-134)||(21321065-21321114)
chr5 (95-142)||(12080410-12080457)
chr5 (85-142)||(22616805-22616862)
chr5 (84-145)||(33848020-33848081)
chr5 (85-145)||(31878699-31878759)
chr5 (107-145)||(2888204-2888242)
chr5 (107-145)||(40133763-40133801)
chr5 (85-130)||(10053906-10053952)
chr5 (107-145)||(23115989-23116027)
chr5 (107-145)||(36860802-36860840)
chr5 (107-145)||(36867140-36867178)
chr5 (85-126)||(10237727-10237768)
chr5 (85-142)||(36055551-36055608)
chr5 (85-145)||(33163829-33163888)
[»] scaffold0001 (1 HSPs)
scaffold0001 (85-124)||(66086-66125)
[»] scaffold0022 (1 HSPs)
scaffold0022 (107-145)||(145784-145822)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 112 - 323
Target Start/End: Complemental strand, 23176456 - 23176246
Alignment:
Q  112 ttttcaaaaaagtcaattttctgacttcaccgtataattgacagagaaatagctccacggcacttaagtgccgataaagannnnnnncttttcatgtata 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||| ||||||||    
T  23176456 ttttcaaaaaagtcaattttctgacttcaccgtataattgacagagaaatagctccatggcacttaagtgccgataaagattgttttctttccatgtata 23176357  T
Q  212 tgttaaaatggtagtggatcggcagttaattacaaccgattaatttctgcggaagttaaatgccgatgatgacatttcagtaattttcatttctagtgtt 311  Q
    |||||||||||| || ||||||||||||||||||  ||||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||| |    
T  23176356 tgttaaaatggttgtagatcggcagttaattacagtcgattaatttctgcggaagttaattgccattgatgacatttcagtaattttaatttctagtg-t 23176258  T
Q  312 tttcagtcaaca 323  Q
    ||||||||||||    
T  23176257 tttcagtcaaca 23176246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 23176521 - 23176455
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgtataatt 150  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23176521 attatactattgaataaacaaaataactttttcaaaaaagtcaattttctaacttcaccgtataatt 23176455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 4108649 - 4108588
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4108649 attatattattgactaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgta 4108588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 28220767 - 28220709
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  28220767 attatactattgactaaacaaaataactttttcaaaaatgtcaaatttctgactacacc 28220709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 30650968 - 30650908
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  30650968 ttatacaattgactaaacaaaataactttttcaaaaaagtcaatttcttgactgcaccgta 30650908  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 7291034 - 7291094
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||| ||| |||||||    
T  7291034 ttatactattgcctaaacaaaataattttttcaaaaaagttaattttctaactgcaccgta 7291094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 18756401 - 18756343
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    |||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||    
T  18756401 attatattattggctaaacaaaataactttttccaaaaaatcaattttctgactgcacc 18756343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 3038723 - 3038772
Alignment:
Q  88 tactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  3038723 tactattggctaaacaaaataatttttttaaaaaagtcaattttctgact 3038772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 3859360 - 3859399
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagt 124  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3859360 ttatactattggctaaacaaaataactttttcaaaaaagt 3859399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 1205304 - 1205342
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  1205304 taacttttttaaaaaagtcaattttctgactacaccgta 1205342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 8803629 - 8803591
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  8803629 taactttttcaaaaaagtcaatttcctgactgcaccgta 8803591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 34686090 - 34686131
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtca 126  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  34686090 ttatactattaactaaaaaaaataacttttccaaaaaagtca 34686131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 38110995 - 38111028
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaa 118  Q
    ||||||||||||||||||||||||| ||||||||    
T  38110995 ttatactattgactaaacaaaataattttttcaa 38111028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 5018555 - 5018587
Alignment:
Q  98 taaacaaaataactttttcaaaaaagtcaattt 130  Q
    |||| ||||||||||||||||||||||||||||    
T  5018555 taaataaaataactttttcaaaaaagtcaattt 5018587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 4902635 - 4902692
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4902635 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 4902692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 23402105 - 23402048
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||| ||||| ||||    
T  23402105 ttatactattggctaaacaaaataacttttttaaaaaagtcagttttttgactgcacc 23402048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 49002538 - 49002591
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    ||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||    
T  49002538 attatactattgattaaataaaataactttttcaaaaaaatcagttttctgact 49002591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 7743245 - 7743305
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||||||||  | ||||||||  ||||||||| |||||||    
T  7743245 ttatactattgactaaacaaaataacttttctagaaaagtcagatttctgactccaccgta 7743305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 22955046 - 22954986
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||| | ||||||||||||||||||| |||||||| |||||||| ||| |||||||    
T  22955046 ttatactataggctaaacaaaataacttttttaaaaaagttaattttctaactgcaccgta 22954986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 37854028 - 37853990
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaag 123  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  37854028 ttatactattgactaaacaaaataacttttccaaaaaag 37853990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 4618488 - 4618431
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    |||||| ||||  |||||||||||| ||||||||||||||||||||||| | ||||||    
T  4618488 ttataccattggttaaacaaaataagtttttcaaaaaagtcaattttctaatttcacc 4618431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 4583272 - 4583310
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||||||||||| || |||||||    
T  4583272 taactttttcaaaaaagtcaattttctggctgcaccgta 4583310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 12390457 - 12390419
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  12390457 taacttttccaaaaaagtcaatttcctgacttcaccgta 12390419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 121294 - 121265
Alignment:
Q  157 gaaatagctccacggcacttaagtgccgat 186  Q
    ||||||||||||||||||||||||||||||    
T  121294 gaaatagctccacggcacttaagtgccgat 121265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 10674990 - 10674930
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||| |||||||||||| ||||| |||||||| | ||| |||| | |||||||    
T  10674990 ttatactattgaataaacaaaataatttttttaaaaaagttagtttcctgattgcaccgta 10674930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 2708204 - 2708265
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2708204 attatactattgactaaacaaaataacttttttaaaaaagtcaattttctgacttcaccgta 2708265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 9743901 - 9743962
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9743901 attatattattggttaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgta 9743962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 9409539 - 9409591
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  9409539 ttatactattgactaatcaaaataactctttcaaaaaagtcagttttctgact 9409591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 17612649 - 17612701
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    ||||||||||| ||||| |||||||||||||||||||| | ||||||||||||    
T  17612649 ttatactattggctaaataaaataactttttcaaaaaaatgaattttctgact 17612701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 20097023 - 20096984
Alignment:
Q  96 actaaacaaaataactttttcaaaaaagtcaattttctga 135  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  20097023 actaaacaaaataacttttttataaaagtcaattttctga 20096984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 51960017 - 51960056
Alignment:
Q  98 taaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  51960017 taaacaaaataacttttccaaaaaaatcaattttctgact 51960056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 6864413 - 6864451
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  6864413 taactttttcaaaaaagtcagttttctgactgcaccgta 6864451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 32592462 - 32592500
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  32592462 taactttttcaaaaaagtcaattttatgactgcaccgta 32592500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 28292428 - 28292387
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtca 126  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  28292428 ttatactattggctaaataaaataacttttttaaaaaagtca 28292387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 7758169 - 7758108
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  7758169 attatactattgactaaacaaaataactttttcaaaaaagtaaattttctaatttcaccgta 7758108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 31706554 - 31706494
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgt 144  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  31706554 attatactattgattaaacaaaataactttttcaaaaaagtcagttttttgactgcaccgt 31706494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 40640364 - 40640311
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaa-aaaagtcaattttctgact 137  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  40640364 ttatactattgactaaacaaaataactttttcaaaaaaagtcaattttttgact 40640311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 32180484 - 32180432
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  32180484 ttatactattggctaaacaaaataacttttccaaagaagtcaattttctgact 32180432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 47930400 - 47930338
Alignment:
Q  85 ttatactattgactaaacaaaataacttttt--caaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||  ||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  47930400 ttatactattagctaaacaaaataattttttttcaaaaaagtcaattttctgacttcaccgta 47930338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 7568459 - 7568413
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaatttt 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  7568459 ttatactattgactaaacaaaataactttttcaaaaatgtcagtttt 7568413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 19606645 - 19606596
Alignment:
Q  87 atactattgactaaacaaaataactttttcaa-aaaagtcaattttctga 135  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19606645 atactattgactaaacaaaataactttttcaaaaaaagccaattttctga 19606596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 49359362 - 49359301
Alignment:
Q  85 ttatactattgactaaacaaaataacttttt-caaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||| || ||||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  49359362 ttatactaatggctaaacaaaataacttttttcaaaaaagtcaattttctaactgcaccgta 49359301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 26000847 - 26000899
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    |||||||||||| | ||||||||||||||| ||||||| |||| |||||||||    
T  26000847 ttatactattgattcaacaaaataacttttacaaaaaattcaaatttctgact 26000899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 38392361 - 38392313
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttct 133  Q
    ||||| ||||| ||||||||||||||||||  |||||||||||||||||    
T  38392361 ttatattattggctaaacaaaataacttttctaaaaaagtcaattttct 38392313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 42664054 - 42664014
Alignment:
Q  86 tatactattgactaaacaaaataactttttcaaaaaagtca 126  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  42664054 tatactattgactaaataaaataactttttctaaaaagtca 42664014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 23165342 - 23165295
Alignment:
Q  98 taaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  23165342 taaataaaataactttttcaaaaaagtcaatttcatgactgcaccgta 23165295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 53811481 - 53811438
Alignment:
Q  102 caaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||    
T  53811481 caaaataactttttcaagaaagtcagttttctgactgcaccgta 53811438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 26941067 - 26941029
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  26941067 taactttttcaaaaaagtcagttttctgactgcaccgta 26941029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 51878427 - 51878476
Alignment:
Q  87 atactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    |||||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  51878427 atactattaactaaactaaataactttttgaaaaaa-tcaattttctgact 51878476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 6613726 - 6613666
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  6613726 ttatactattgactaaacaaaataactttttcaaaaaagtcagtttcctgactgcaccgta 6613666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 11083892 - 11083831
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  11083892 attatactattaactaaataaaataactttttcaaaaaagtaaattttttgacttcaccgta 11083831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 4104330 - 4104383
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  4104330 attatactattgacaagacaaaataactttttcaaaaaagtcagttttctgact 4104383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 19632064 - 19632124
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||||||| ||| |||||||    
T  19632064 ttatactattgtccaaacaaaataactttttgaaaaaaatcaattttctaactgcaccgta 19632124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 30341530 - 30341581
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctga 135  Q
    ||||||||| || ||||||||||||||||| ||||| |||||||||||||||    
T  30341530 attatactactggctaaacaaaataactttctcaaacaagtcaattttctga 30341581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 21016777 - 21016735
Alignment:
Q  103 aaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  21016777 aaaataactttttcaaaaaagacaattttctgactgcaccgta 21016735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 26301648 - 26301595
Alignment:
Q  92 attgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||| ||||||| ||||||||||| ||||||||| | |||||||||||    
T  26301648 attgactaaataaaataattttttcaaaaatgtcaattttttaacttcaccgta 26301595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 24661744 - 24661704
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtca 126  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  24661744 ttatactattgactaaataaaataacttttt-aaaaaagtca 24661704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 19073666 - 19073717
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctga 135  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  19073666 attatactattgactaaataaaataacttttacaaaaaagtcaattttctga 19073717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 41713475 - 41713537
Alignment:
Q  84 attatactattgactaaacaaaataactttttc-aaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||  |||||||||||||    
T  41713475 attatactattgactaaacaaaataactttttcaaaaaaaatcaatttgatgacttcaccgta 41713537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 19093768 - 19093829
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| |||||||    
T  19093768 attatactattgattaaacaaattaacttttttaaaaaagtcaattttttgactgcaccgta 19093829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 17244837 - 17244789
Alignment:
Q  89 actattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  17244837 actattgactaaacaaaataattttttcaaaaaagtcagttttctgact 17244789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 6178089 - 6178149
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||| ||||||||||||||||||  |||||||||| |||| ||||| |||||||    
T  6178089 ttatactattggctaaacaaaataacttttctaaaaaagtcagttttttgactgcaccgta 6178149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 18514465 - 18514405
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||  |||||||||||||||||||||||||| ||| ||| |||||| |||||||    
T  18514465 ttatactattagctaaacaaaataactttttcaaaaaattcagtttcctgactccaccgta 18514405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 39788343 - 39788284
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||| |||| |||||||    
T  39788343 ttatactattgactaaacaaaat-actttttcaaaaaaatcagttttcagactgcaccgta 39788284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 4167300 - 4167338
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4167300 taactttttcaaaaaagtcaattttctgactgcaccgta 4167338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 18779140 - 18779103
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaa 122  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18779140 ttatactattgactaaacaaaataacttttccaaaaaa 18779103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 34441614 - 34441573
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtc 125  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  34441614 attatactattgaccaaataaaataactttttcaaaaaagtc 34441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 18059096 - 18059064
Alignment:
Q  84 attatactattgactaaacaaaataactttttc 116  Q
    |||||||||||||||||||||||||||||||||    
T  18059096 attatactattgactaaacaaaataactttttc 18059064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 38249885 - 38249838
Alignment:
Q  89 actattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  38249885 actattaactaaacaagataactttttca-aaaagtcaattttctgact 38249838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 15651471 - 15651530
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgt 144  Q
    ||||||||||| ||||||||||||| ||| | ||||  ||||||||||||||| ||||||    
T  15651471 ttatactattggctaaacaaaataattttctaaaaagggtcaattttctgactgcaccgt 15651530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 11366205 - 11366167
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  11366205 taactttttcaaaaaaatcaattttctgactgcaccgta 11366167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 43648070 - 43648032
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  43648070 taactttttcaaaaaagtcaatttcctgactgcaccgta 43648032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 42005696 - 42005752
Alignment:
Q  89 actattgactaaacaaaataactttttcaaaaaagtcaa-ttttctgacttcaccgta 145  Q
    |||||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||||    
T  42005696 actattaactaaacaaaataatttttttaaaaaa-tcaatttttctgacttcaccgta 42005752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 18947343 - 18947291
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgact 137  Q
    ||||||||| ||||||||||||||| ||||   ||||||||| ||||||||||    
T  18947343 ttatactatcgactaaacaaaataatttttctgaaaaagtcagttttctgact 18947291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 16127834 - 16127891
Alignment:
Q  87 atactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  16127834 atactattgactaaataaaataacttttt-aaaaaagtcaattttctgacttcaacgta 16127891  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 16135638 - 16135695
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    ||||||||||  |||||||||||||||||||||||||||  |||||||||||| ||||    
T  16135638 ttatactattagctaaacaaaataactttttcaaaaaagcaaattttctgactgcacc 16135695  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 4146753 - 4146693
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||| ||||||| ||||||||||||||||||||||||||||| |||  | |||||||||||    
T  4146753 ttattctattgattaaacaaaataactttttcaaaaaagtcagtttcttaacttcaccgta 4146693  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 47555070 - 47555130
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||| || ||| |||||||    
T  47555070 ttatactattggttaaacaaaataactttttcaaaaaagtcagtttcctaactgcaccgta 47555130  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 43579562 - 43579619
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    |||||||||||||||||||||||||| ||||  ||||||||| ||| |||||| ||||    
T  43579562 ttatactattgactaaacaaaataacattttttaaaaagtcagtttactgactgcacc 43579619  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 5500668 - 5500728
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||  |||||||||||||||||||||||||||| | |||| | ||| |||||||    
T  5500668 ttatactattagctaaacaaaataactttttcaaaaaagttagttttttaactgcaccgta 5500728  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 31804829 - 31804770
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccg 143  Q
    ||||||||||||  ||||||||||||||||   |||||| |||||||||||||| |||||    
T  31804829 attatactattggttaaacaaaataactttactaaaaaaatcaattttctgactgcaccg 31804770  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 25943512 - 25943571
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||| |||||||||||||  |||| ||||  |||||||||||||||||| ||||    
T  25943512 attatactattggctaaacaaaataatgtttttaaaa--gtcaattttctgacttcaacgta 25943571  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 10598200 - 10598260
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||| ||||||  ||||||||| ||||||||||||||||||| |||  ||||| |||||||    
T  10598200 ttattctattggttaaacaaaacaactttttcaaaaaagtcagtttcttgactgcaccgta 10598260  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 42663283 - 42663251
Alignment:
Q  98 taaacaaaataactttttcaaaaaagtcaattt 130  Q
    |||| ||||||||||||||||||||||||||||    
T  42663283 taaataaaataactttttcaaaaaagtcaattt 42663251  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 21321065 - 21321114
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctg 134  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  21321065 ttatactattggctaaacaaaataactttttcaaaaaagtcagttttctg 21321114  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 12080457 - 12080410
Alignment:
Q  95 gactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  12080457 gactaaacaaaataactttttcaaaaaagtcaatttcctgactacacc 12080410  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22616805 - 22616862
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    ||||||||||| |||||||||||||||||| ||||||| ||| |||||||||| ||||    
T  22616805 ttatactattggctaaacaaaataacttttccaaaaaaatcagttttctgactgcacc 22616862  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 33848081 - 33848020
Alignment:
Q  84 attatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||| |||||| |||||||| |||||||||||||| |||||||||||||||  |||||||    
T  33848081 attatattattgattaaacaaagtaactttttcaaaatagtcaattttctgaccgcaccgta 33848020  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 31878699 - 31878759
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||  |||||||| |||||||||  |||||||||||||||| |||||||||||    
T  31878699 ttatactattggttaaacaaactaactttttttaaaaagtcaattttcttacttcaccgta 31878759  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 2888242 - 2888204
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  2888242 taactttttcaaaaaagtcaattttctgactgcaccgta 2888204  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 40133763 - 40133801
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  40133763 taactttttcaaaaaagtcaattttctgactgcaccgta 40133801  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 10053906 - 10053952
Alignment:
Q  85 ttatactattgactaaacaaa-ataactttttcaaaaaagtcaattt 130  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||    
T  10053906 ttatactattgggtaaacaaacataactttttcaaaaaagtcaattt 10053952  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 23116027 - 23115989
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  23116027 taactttttcaaaaaagtcattttcctgacttcaccgta 23115989  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 36860802 - 36860840
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  36860802 taacttttttaaaaaagtcaattttctgactgcaccgta 36860840  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 36867140 - 36867178
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  36867140 taacttttttaaaaaagtcaattttctgactgcaccgta 36867178  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 10237727 - 10237768
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtca 126  Q
    ||||||||||| ||||||||||||||||||  ||||||||||    
T  10237727 ttatactattggctaaacaaaataacttttctaaaaaagtca 10237768  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 36055608 - 36055551
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcacc 142  Q
    ||||||||||  |||||||||||||||||| ||||||||| | |||| ||||| ||||    
T  36055608 ttatactattagctaaacaaaataacttttccaaaaaagttagttttttgactacacc 36055551  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 33163829 - 33163888
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||| |||||| |||| ||||||||||  |||||||| | |||||||    
T  33163829 ttatactattgactaaac-aaataatttttccaaaaaagtcggttttctgattgcaccgta 33163888  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 66086 - 66125
Alignment:
Q  85 ttatactattgactaaacaaaataactttttcaaaaaagt 124  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  66086 ttatactattggctaaacaaaataattttttcaaaaaagt 66125  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 145822 - 145784
Alignment:
Q  107 taactttttcaaaaaagtcaattttctgacttcaccgta 145  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  145822 taactttttcaaaaaagtcaatttcctgactgcaccgta 145784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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