View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_6 (Length: 576)
Name: NF1243_low_6
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 177 - 566
Target Start/End: Original strand, 39955162 - 39955551
Alignment:
| Q |
177 |
tataccatttgtgatgaagtaatgatgttgatggaagagagagaaagttttagagaagagaataggactcagaagaatgatctgaagctgaaagacaaag |
276 |
Q |
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| T |
39955162 |
tataccatttgtgatgaagtaatgatgttgatggaagagagagaaagttttagagaagagaataggactcagaagaatgatctgaagctgaaagacaaag |
39955261 |
T |
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| Q |
277 |
agaaaatagaggtaataagacagctgagttcaacaatagatatgctgaagcaggaaaatgtaagaatgagaagcttcatagctaaggaatctgccaagaa |
376 |
Q |
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| T |
39955262 |
agaaaatagaggtaataagacagctgagttcaacaatagatatgctgaagcaggaaaatgtaaaaatgagaagcttcatagctaaggaatctgccaagaa |
39955361 |
T |
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| Q |
377 |
atggaagaccccatttgagttcaacaaacttattgagacattctcagggaaattgcttaaggggattccaaggaataagcctagtattgtagctctctag |
476 |
Q |
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| T |
39955362 |
atggaagaccccatttgagttcaacaaacttattgaaacattctcagggaaattgcttaaggggattccaaggaataagcctagtattgtagctctctag |
39955461 |
T |
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| Q |
477 |
atatggtttaattagtttaaaatactatatagttctctaaacaatattataaagatgatatatacatatgtaatatgttagtgccctatg |
566 |
Q |
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| T |
39955462 |
atatggttcaattagtttaaaatactatatagttctctaaacaatattataaagatgatatatacatatgtaatatgttagtgccttatg |
39955551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39954986 - 39955101
Alignment:
| Q |
1 |
tcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatga |
100 |
Q |
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| T |
39954986 |
tcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatga |
39955085 |
T |
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| Q |
101 |
agtaatgaagttgagg |
116 |
Q |
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| T |
39955086 |
agtaatgaagttgagg |
39955101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 39954712 - 39954750
Alignment:
| Q |
78 |
cagaaagataccatttgcaatgaagtaatgaagttgagg |
116 |
Q |
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| T |
39954712 |
cagaaagataccatttgtaatgacgtaatgaagttgagg |
39954750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 39955064 - 39955106
Alignment:
| Q |
7 |
agaaagataccatatgcaatgaggtagtgaagttgagggaaga |
49 |
Q |
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| T |
39955064 |
agaaagataccatttgcaatgaagtaatgaagttgagggaaga |
39955106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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