View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_63 (Length: 317)
Name: NF1243_low_63
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 87 - 313
Target Start/End: Original strand, 1131576 - 1131803
Alignment:
| Q |
87 |
gaaacgtaagaaagacagggagagaatagaagtagctgatcggtgcaaccttctcgagaggaaggtggtggcggcgccgccgctactgtaacggcggaga |
186 |
Q |
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| T |
1131576 |
gaaacgtaagaaagacagggagagaatagaagtagctgatcggtgcaaccttctcgagaggaaggtggtggcggcgccgccgctactgtaacggcggaga |
1131675 |
T |
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| Q |
187 |
tactgagactcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131676 |
tactgagactcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaat |
1131775 |
T |
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| Q |
287 |
tatcactattgccccttc-atctcactc |
313 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
1131776 |
tatcactattgccccttctatctcactc |
1131803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 87 - 304
Target Start/End: Complemental strand, 22970935 - 22970718
Alignment:
| Q |
87 |
gaaacgtaagaaagacagggagagaatagaagtagctgatcggtgcaaccttctcgagaggaaggtggtggcggcgccgccgctactgtaacggcggaga |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22970935 |
gaaacgtaagaaagacagggagagaatagaagtagctgatcggtgcaaccttctcgagaggaaggtggtggcggcgccaccgctactgtaacggcggaga |
22970836 |
T |
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| Q |
187 |
tactgagactcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaat |
286 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22970835 |
taccgagactcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaat |
22970736 |
T |
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| Q |
287 |
tatcactattgccccttc |
304 |
Q |
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|||||||||||||||||| |
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| T |
22970735 |
tatcactattgccccttc |
22970718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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