View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_64 (Length: 316)
Name: NF1243_low_64
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_64 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 94 - 316
Target Start/End: Complemental strand, 31252346 - 31252125
Alignment:
| Q |
94 |
acaattttccaagaccattatttattcaatattacctataacttaaacacaattattctacaattgaagtcaacagttatttannnnnnngctaatacgt |
193 |
Q |
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| T |
31252346 |
acaattttccaagaccattatttattcaatattacctataacttaaacacaattattctacaattgaagtcaaaagttatttatttttt-gctaatacgt |
31252248 |
T |
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| Q |
194 |
aatcatttaattacttaagatttgtgtaacatacattggtgatatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagtttt |
293 |
Q |
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| T |
31252247 |
aaacatttaattacttaagatttgtataacatacattggtggtatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagtttt |
31252148 |
T |
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| Q |
294 |
agaaagatgataaaaaatatcat |
316 |
Q |
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| T |
31252147 |
agaaagatgataaaaaatatcat |
31252125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 13003244 - 13003461
Alignment:
| Q |
98 |
ttttccaagaccattatttattcaatattacctataacttaaacacaattattctacaattgaagtcaacagttatttannnnnnngctaatacgtaatc |
197 |
Q |
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| T |
13003244 |
ttttccaagaccattatttattcaatattacctataacttaaacacaattattctacaattgaagtcaaaagttatttatttttt-gctaatacgtaaac |
13003342 |
T |
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| Q |
198 |
atttaattacttaagatttgtgtaacatacattggtgatatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagttttagaa |
297 |
Q |
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| T |
13003343 |
atttaattacttaagatttgtataacatacattggtggtatttttgattgattcaaccatcaaaggaactttctctcgtagttctttaatagttttagaa |
13003442 |
T |
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| Q |
298 |
agatgataaaaaatatcat |
316 |
Q |
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| T |
13003443 |
agatgataaaaaatatcat |
13003461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 31094044 - 31094255
Alignment:
| Q |
98 |
ttttccaagaccattatttattcaatattacctataacttaaacacaattattctacaattgaagtcaacagttatttannnnnnngctaatacgtaatc |
197 |
Q |
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| T |
31094044 |
ttttccaagactgttatttatttaataatacctataactcaaacacaatatatctacaattgaagtaaactttttttt-------tgccaatacttcaac |
31094136 |
T |
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| Q |
198 |
atttaattacttaagatttgtgtaacatacattggtgatatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagttttagaa |
297 |
Q |
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||||||||||||||| ||||| ||||||||| ||||| ||||||||||||| ||||| ||||| |||||| ||||| | ||||||||||||||||| || |
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| T |
31094137 |
atttaattacttaagttttgtataacatacaatggtggtatttttgattgaatcaactatcaagggaactatctcttgcagttctgtaatagttttgaaa |
31094236 |
T |
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| Q |
298 |
agatgataaaaaatatcat |
316 |
Q |
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||||| ||||||||||||| |
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| T |
31094237 |
agatggtaaaaaatatcat |
31094255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 27206285 - 27206203
Alignment:
| Q |
220 |
taacatacattggtgatatttttga-ttgattcaaccatcaaaggaactttctctcgtagttctgtaatagttttagaaagat |
301 |
Q |
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| T |
27206285 |
taacatacattggtggtattttttaattgactcaacgatcaagggaaccatctctcgcagttctgtaatagttttagaaagat |
27206203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 16162970 - 16162846
Alignment:
| Q |
192 |
gtaatcatttaattacttaagatttg-tgtaacatacattggtgatatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagt |
290 |
Q |
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| T |
16162970 |
gtaaacatttaattacttaa-atttgatataacctacattggtggtcttcgtaattgattcaacaatcaagggaacaatttctcgcagttctgtaatagt |
16162872 |
T |
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| Q |
291 |
tttagaaagatgataaaaaatatcat |
316 |
Q |
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| T |
16162871 |
tttagaaatatgtaaaaaaacatcat |
16162846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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