View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_65 (Length: 310)

Name: NF1243_low_65
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_65
NF1243_low_65
[»] scaffold0188 (1 HSPs)
scaffold0188 (43-242)||(6802-7001)
[»] chr1 (27 HSPs)
chr1 (156-242)||(6160426-6160512)
chr1 (173-239)||(31042865-31042931)
chr1 (173-238)||(28749060-28749125)
chr1 (156-239)||(6267823-6267906)
chr1 (172-238)||(12039151-12039217)
chr1 (155-235)||(26093466-26093546)
chr1 (156-235)||(11449955-11450034)
chr1 (156-241)||(3260652-3260738)
chr1 (180-238)||(39864180-39864238)
chr1 (201-246)||(31154189-31154234)
chr1 (171-235)||(34031509-34031573)
chr1 (172-235)||(9307699-9307762)
chr1 (172-239)||(12151244-12151311)
chr1 (180-239)||(27897023-27897082)
chr1 (180-239)||(35682796-35682855)
chr1 (156-242)||(32970534-32970620)
chr1 (158-239)||(3312179-3312260)
chr1 (191-239)||(36701989-36702037)
chr1 (191-239)||(36718093-36718141)
chr1 (172-235)||(24991636-24991699)
chr1 (180-238)||(23168984-23169042)
chr1 (172-234)||(30754924-30754986)
chr1 (201-242)||(6365696-6365737)
chr1 (156-205)||(24499962-24500011)
chr1 (194-243)||(37506191-37506240)
chr1 (201-238)||(44707772-44707809)
chr1 (203-239)||(17988572-17988608)
[»] chr4 (41 HSPs)
chr4 (159-239)||(49175907-49175987)
chr4 (156-239)||(2653488-2653569)
chr4 (172-239)||(16821317-16821384)
chr4 (156-239)||(32469918-32470001)
chr4 (156-242)||(462023-462109)
chr4 (172-239)||(7061650-7061717)
chr4 (156-239)||(36985854-36985937)
chr4 (187-237)||(26885504-26885554)
chr4 (172-238)||(47464351-47464417)
chr4 (156-235)||(8175550-8175629)
chr4 (156-239)||(18532247-18532330)
chr4 (156-235)||(35251961-35252040)
chr4 (156-235)||(41711426-41711505)
chr4 (172-235)||(42616889-42616952)
chr4 (180-238)||(6643654-6643712)
chr4 (172-238)||(32884870-32884936)
chr4 (180-238)||(34360724-34360782)
chr4 (172-238)||(40122840-40122906)
chr4 (172-238)||(43237312-43237378)
chr4 (180-238)||(51625152-51625210)
chr4 (161-242)||(2066854-2066935)
chr4 (160-221)||(3669965-3670026)
chr4 (172-225)||(4972642-4972695)
chr4 (173-238)||(17237283-17237348)
chr4 (158-239)||(27880214-27880294)
chr4 (158-235)||(30192277-30192354)
chr4 (158-239)||(53412176-53412257)
chr4 (180-235)||(28500885-28500940)
chr4 (172-235)||(35311209-35311272)
chr4 (172-235)||(38405088-38405151)
chr4 (172-235)||(46396869-46396932)
chr4 (172-235)||(49428328-49428391)
chr4 (180-242)||(49579172-49579235)
chr4 (172-238)||(2942631-2942697)
chr4 (170-236)||(44536180-44536246)
chr4 (190-239)||(2158004-2158053)
chr4 (156-237)||(33790701-33790782)
chr4 (205-238)||(49747030-49747063)
chr4 (156-239)||(6609829-6609913)
chr4 (194-242)||(43902319-43902367)
chr4 (180-236)||(47358943-47358999)
[»] chr5 (24 HSPs)
chr5 (156-235)||(32440213-32440292)
chr5 (156-239)||(38508149-38508232)
chr5 (169-237)||(8698379-8698447)
chr5 (156-235)||(843509-843588)
chr5 (172-239)||(9515814-9515881)
chr5 (174-239)||(15439299-15439364)
chr5 (201-241)||(3076656-3076696)
chr5 (171-235)||(8724986-8725050)
chr5 (172-235)||(27542867-27542930)
chr5 (172-235)||(29570464-29570527)
chr5 (172-238)||(2232051-2232117)
chr5 (172-238)||(4818620-4818686)
chr5 (172-238)||(15818458-15818524)
chr5 (172-238)||(40530202-40530268)
chr5 (172-221)||(42922845-42922894)
chr5 (159-235)||(37184044-37184120)
chr5 (172-235)||(1248582-1248645)
chr5 (172-239)||(7827904-7827971)
chr5 (155-242)||(11796128-11796215)
chr5 (184-235)||(30512675-30512726)
chr5 (184-235)||(30553015-30553066)
chr5 (156-237)||(41478897-41478978)
chr5 (172-235)||(29856119-29856180)
chr5 (161-237)||(41492372-41492448)
[»] chr3 (32 HSPs)
chr3 (172-235)||(1778714-1778777)
chr3 (160-239)||(12736540-12736619)
chr3 (160-238)||(14194624-14194702)
chr3 (156-249)||(38795402-38795495)
chr3 (156-233)||(40462386-40462463)
chr3 (156-239)||(10366606-10366689)
chr3 (172-238)||(8679034-8679100)
chr3 (172-238)||(43253843-43253909)
chr3 (172-232)||(30861470-30861529)
chr3 (172-235)||(37772944-37773007)
chr3 (172-238)||(37312019-37312085)
chr3 (173-235)||(51837940-51838002)
chr3 (174-242)||(24569082-24569150)
chr3 (156-235)||(37695629-37695709)
chr3 (156-235)||(19609371-19609450)
chr3 (168-239)||(19823079-19823150)
chr3 (172-239)||(30190640-30190707)
chr3 (156-239)||(44301630-44301713)
chr3 (172-234)||(33491063-33491125)
chr3 (172-237)||(27471405-27471470)
chr3 (170-235)||(28690760-28690825)
chr3 (173-238)||(50035198-50035263)
chr3 (172-239)||(37497560-37497627)
chr3 (160-235)||(45811727-45811802)
chr3 (173-239)||(34750564-34750630)
chr3 (194-235)||(7757599-7757640)
chr3 (173-238)||(11632150-11632214)
chr3 (156-241)||(17652814-17652899)
chr3 (170-235)||(19611980-19612045)
chr3 (168-235)||(5322915-5322980)
chr3 (194-238)||(23004384-23004428)
chr3 (191-239)||(30682065-30682113)
[»] chr8 (29 HSPs)
chr8 (172-237)||(21216082-21216147)
chr8 (155-238)||(7172983-7173066)
chr8 (172-239)||(39405830-39405897)
chr8 (172-238)||(1875573-1875639)
chr8 (190-242)||(9839825-9839877)
chr8 (156-239)||(27294024-27294107)
chr8 (172-238)||(39482684-39482750)
chr8 (173-235)||(42972490-42972552)
chr8 (168-237)||(31082689-31082758)
chr8 (156-239)||(51181-51263)
chr8 (156-242)||(17719223-17719309)
chr8 (168-238)||(29226208-29226278)
chr8 (193-242)||(31331473-31331522)
chr8 (173-234)||(39329370-39329430)
chr8 (175-238)||(1739709-1739772)
chr8 (156-235)||(4428317-4428395)
chr8 (172-239)||(10179928-10179995)
chr8 (172-239)||(17823989-17824055)
chr8 (156-235)||(32476359-32476438)
chr8 (172-239)||(34948668-34948735)
chr8 (172-235)||(45425647-45425710)
chr8 (181-235)||(5356671-5356725)
chr8 (172-226)||(11976917-11976971)
chr8 (161-235)||(36967433-36967507)
chr8 (173-239)||(39329087-39329153)
chr8 (156-197)||(35732327-35732368)
chr8 (201-238)||(44761504-44761541)
chr8 (163-235)||(7703128-7703200)
chr8 (190-234)||(34455684-34455728)
[»] scaffold0095 (1 HSPs)
scaffold0095 (172-239)||(50272-50339)
[»] scaffold0294 (1 HSPs)
scaffold0294 (172-238)||(17104-17170)
[»] chr7 (25 HSPs)
chr7 (180-242)||(2850876-2850938)
chr7 (156-235)||(16904458-16904537)
chr7 (172-235)||(26974108-26974171)
chr7 (156-235)||(34947579-34947658)
chr7 (172-238)||(7463289-7463355)
chr7 (172-238)||(8592427-8592493)
chr7 (172-236)||(28103811-28103875)
chr7 (172-239)||(21759971-21760038)
chr7 (156-239)||(44180280-44180363)
chr7 (180-238)||(5524456-5524514)
chr7 (168-238)||(34100530-34100600)
chr7 (180-237)||(2459546-2459603)
chr7 (173-238)||(12631381-12631446)
chr7 (189-238)||(33819290-33819339)
chr7 (156-239)||(83460-83543)
chr7 (168-235)||(3178187-3178254)
chr7 (156-235)||(9786067-9786146)
chr7 (172-239)||(22738776-22738843)
chr7 (172-238)||(11373415-11373481)
chr7 (173-235)||(13962038-13962100)
chr7 (168-246)||(32346035-32346113)
chr7 (201-238)||(24516305-24516342)
chr7 (184-241)||(48608935-48608992)
chr7 (201-237)||(19271749-19271785)
chr7 (174-238)||(41506054-41506118)
[»] chr6 (13 HSPs)
chr6 (172-238)||(31894189-31894255)
chr6 (190-242)||(1063600-1063652)
chr6 (156-235)||(7920310-7920389)
chr6 (156-242)||(3291731-3291817)
chr6 (172-234)||(3720220-3720282)
chr6 (156-242)||(32440608-32440694)
chr6 (180-237)||(13909494-13909551)
chr6 (205-242)||(16406798-16406835)
chr6 (160-239)||(15582351-15582430)
chr6 (180-239)||(21804516-21804575)
chr6 (172-242)||(1225112-1225182)
chr6 (161-239)||(28101327-28101405)
chr6 (181-242)||(34300060-34300121)
[»] chr2 (22 HSPs)
chr2 (180-238)||(8947038-8947096)
chr2 (158-230)||(18853164-18853236)
chr2 (172-235)||(19937749-19937812)
chr2 (172-235)||(39691562-39691625)
chr2 (156-235)||(45235653-45235732)
chr2 (172-234)||(17695403-17695465)
chr2 (180-231)||(15435447-15435498)
chr2 (172-235)||(16377634-16377697)
chr2 (172-239)||(27501516-27501583)
chr2 (156-239)||(36794352-36794435)
chr2 (172-234)||(26607946-26608008)
chr2 (184-238)||(35313956-35314010)
chr2 (173-237)||(5789627-5789691)
chr2 (172-236)||(31448671-31448735)
chr2 (156-239)||(16463757-16463840)
chr2 (172-239)||(16805949-16806016)
chr2 (172-239)||(16845230-16845297)
chr2 (180-235)||(43410498-43410553)
chr2 (172-238)||(3323264-3323330)
chr2 (180-238)||(43115788-43115846)
chr2 (156-237)||(25637551-25637631)
chr2 (202-239)||(41220954-41220991)
[»] scaffold0302 (1 HSPs)
scaffold0302 (172-235)||(16170-16233)
[»] scaffold0583 (1 HSPs)
scaffold0583 (156-235)||(2097-2176)
[»] scaffold0464 (1 HSPs)
scaffold0464 (180-239)||(6273-6332)
[»] scaffold0012 (1 HSPs)
scaffold0012 (172-235)||(105756-105819)
[»] scaffold0159 (1 HSPs)
scaffold0159 (173-237)||(34000-34064)


Alignment Details
Target: scaffold0188 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 7001 - 6802
Alignment:
Q  43 acttactgctctccctcttatatgagaaattaacgagatgattcaaagtaatatattcatctttattagtttttaggggaaattacaccgaacttcttaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7001 acttactgctctccctcttatatgagaaattaacgagatgattcaaagtaatatattcatctttattagttttaaggggaaattacaccgaacttcttaa 6902  T
Q  143 attactcatttgctctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  6901 attactcatttgctctcaaaataacagttgtttaaggtttgtgcgtgatttttaaggaaatgattaattgttttaatttcaatgataaaattagtattat 6802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 6160426 - 6160512
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||||||| ||| ||||| || ||||| | ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  6160426 tctcaaaataatagtcgtttacgacttgtgtacgatttttaagaaaatgattaattgtgttgatttcaatgataaaattagtattat 6160512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 31042931 - 31042865
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||    
T  31042931 tttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtat 31042865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 28749125 - 28749060
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||||||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  28749125 tttaagatttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 28749060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 6267823 - 6267906
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| ||| ||||||| ||||||||  |||||||| | ||||||||||||| ||||||| |||||||||| ||||||    
T  6267823 tctcaaaataatagtcgtttaaggtttgtgcactatttttaaagaaatgattaattgtgttgattttaatgataaaactagtat 6267906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 12039217 - 12039151
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  12039217 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 12039151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 26093546 - 26093466
Alignment:
Q  155 ctctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||| ||||||  || |||||||||||||||| |||| |||||  ||||||||||||| |||||||||||| ||||||||    
T  26093546 ctctctaaataatggtcgtttaagatttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaatta 26093466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 11450034 - 11449955
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||||| ||||||||||| |||||||| |||| |||||| |||| |||||| | |||||||||||| ||||||||    
T  11450034 tctctaaataatagttgtttaaggtttgtgcacgattattaaggaaatggttaattatgttgatttcaatggtaaaatta 11449955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 3260738 - 3260652
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgattttt-aagggaatgattaattgttttgatttcaatgataaaattagtatta 241  Q
    |||| |||||| ||| |||||||||||||| ||||||||| || | |||||||| |||| ||||||||||| |||||| ||||||||    
T  3260738 tctctaaataatagtcgtttaagatttgtgtatgattttttaaagaaatgattagttgtgttgatttcaataataaaagtagtatta 3260652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 39864238 - 39864180
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  39864238 tttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 39864180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 31154234 - 31154189
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagtattatctac 246  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31154234 aatgattaattgtgttgattttaatgataaaattagtattatctac 31154189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 34031509 - 34031573
Alignment:
Q  171 tgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||| ||||||||||||| |||||| |||||||| |||| |||||| ||||| ||||||||    
T  34031509 tgtttaaggtttgtgcatgattattaaggaaatgattacttgtgttgattccaatggtaaaatta 34031573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 9307762 - 9307699
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||||| || |||| |||||| ||||||||| ||| |||||||||||||||||||||    
T  9307762 gtttaaggtttgtacacgattattaaggaaatgattaactgtgttgatttcaatgataaaatta 9307699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 12151311 - 12151244
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||| |||||| ||||||  || ||||||| | |||||||||||||||||||||||||    
T  12151311 gtttaaggtttgtgtatgattattaaggagattattaattatgttgatttcaatgataaaattagtat 12151244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 27897082 - 27897023
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||||||||||||||| ||| |||||  || ||||||| |||||||||||||||||    
T  27897082 tttgtgcatgatttttaaggaaataattaaacgtgttgattttaatgataaaattagtat 27897023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 35682796 - 35682855
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||| ||||||||| | || |||||||||| |||||||||||||||| ||||||||    
T  35682796 tttgtgcacgatttttaacgaaaagattaattgtgttgatttcaatgataacattagtat 35682855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 32970534 - 32970620
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||||||| | | ||||||| || ||  | |||| |||||  ||||||||||||| ||||||||||||||||||||| ||||||    
T  32970534 tctcaaaataatattcgtttaaggttcgtatacgattattaagaaaatgattaattgtgttgatttcaatgataaaattaatattat 32970620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 3312260 - 3312179
Alignment:
Q  158 tcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| |||  ||||||||||||  || ||||| || | ||||||||||||| ||||||| |||||| ||||||||||    
T  3312260 tcaaaataatagtcatttaagatttgtatataattttaaaagaaatgattaattgtgttgattttaatgattaaattagtat 3312179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 36702037 - 36701989
Alignment:
Q  191 tttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||||||    
T  36702037 tttttaaggaaatgattaattatgttgatttcaatggtaaaattagtat 36701989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 36718141 - 36718093
Alignment:
Q  191 tttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||||||    
T  36718141 tttttaaggaaatgattaattatgttgatttcaatggtaaaattagtat 36718093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 24991636 - 24991699
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||||| || |||| |||||| ||||||||||||| |||||||||| | ||||||||    
T  24991636 gtttaaggtttgtacacgattattaaggaaatgattaattgtgttgatttcaacggtaaaatta 24991699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 23168984 - 23169042
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||| |||| |||||  ||| ||||||||| |||||||||||| |||||||||||    
T  23168984 tttgtgcacgattattaagaaaataattaattgtgttgatttcaatggtaaaattagta 23169042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 30754924 - 30754986
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    ||||||||||| |||| |||| |||||| ||||||||||||| ||||||| || | |||||||    
T  30754924 gtttaagatttatgcacgattattaaggaaatgattaattgtgttgattttaagggtaaaatt 30754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 6365737 - 6365696
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||||||||| ||||||||||| || |||||||||||||    
T  6365737 aatgattaattgtgttgatttcaataatcaaattagtattat 6365696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 24499962 - 24500011
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatga 205  Q
    ||||||||||| ||| |||||| |||||||| |||||||||||| |||||    
T  24499962 tctcaaaataatagtcgtttaacatttgtgcctgatttttaaggaaatga 24500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 37506240 - 37506191
Alignment:
Q  194 ttaagggaatgattaattgttttgatttcaatgataaaattagtattatc 243  Q
    |||||| ||||||||||||| |||||||  ||||||||||||||| ||||    
T  37506240 ttaaggaaatgattaattgtgttgattttgatgataaaattagtactatc 37506191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 44707772 - 44707809
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  44707772 aatgattaattatattgatttcaatgataaaattagta 44707809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 17988572 - 17988608
Alignment:
Q  203 tgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  17988572 tgattaattgtgttgatttcaatgttaaaattagtat 17988608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 49175907 - 49175987
Alignment:
Q  159 caaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||| ||| ||||||| |||||||||||||||||||  |||||||||||||   |||||||||||||||||||||||    
T  49175907 caaaataatagtcgtttaaggtttgtgcatgatttttaagaaaatgattaattgtggagatttcaatgataaaattagtat 49175987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 2653569 - 2653488
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||||||||||||||||||||||||| ||||   ||||||||||||| |||||||||||  ||||||||||||    
T  2653569 tctctaaataatagttgtttaagatttgtgcatgattattaa--aaatgattaattgtgttgatttcaattgtaaaattagtat 2653488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 16821317 - 16821384
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||| | ||||||||||||| |||||||||||||||||||||||||    
T  16821317 gtttaaggtttgtgcacgattattaatgcaatgattaattgtgttgatttcaatgataaaattagtat 16821384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 32469918 - 32470001
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| | ||||||||||||| ||||| ||||| |||  ||||||||||||| ||||||| |||| ||||||||||||    
T  32469918 tctcaaaataatatttgtttaagatttatgcataattttaaagaaaatgattaattgtgttgattttaatggtaaaattagtat 32470001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 462109 - 462023
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||| |||||| |||  |||||||||||||||| |||||||||  ||||||||||||| |||||||||||| ||||| || ||||||    
T  462109 tctcgaaataatagtaatttaagatttgtgcataatttttaagaaaatgattaattgtattgatttcaatggtaaaagtaatattat 462023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 7061650 - 7061717
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| ||||| || |||| |||||| ||||||||||||| |||||||||||| ||||||||||||    
T  7061650 gtttaaggtttgtacacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagtat 7061717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 36985937 - 36985854
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| | | ||||||||||| |  | ||||||| ||| ||||||||||||| |||||||||||| ||||||||||||    
T  36985937 tctcaaaataatactcgtttaagatttttatacgatttttcaggaaatgattaattgtgttgatttcaatggtaaaattagtat 36985854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 26885554 - 26885504
Alignment:
Q  187 atgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  26885554 atgatttttaatgaaatgattaattgtattgatttcaatgataaaattagt 26885504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 47464351 - 47464417
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||| ||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  47464351 gtttaaggtttgagcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 47464417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 8175550 - 8175629
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| ||||||||| |  |||||||||||| ||||   ||||| ||||||| |||||||||||| ||||||||    
T  8175550 tctcaaaataatagttgtttatggcttgtgcatgattattaaaaaaatgaataattgtgttgatttcaatggtaaaatta 8175629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 18532330 - 18532247
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| ||||||||||| |||||||||||||||||    ||||||||||| | |  |||| |||| ||||||||||||    
T  18532330 tctcaaaataatagttgtttaaggtttgtgcatgatttttacataaatgattaattatataaattttaatggtaaaattagtat 18532247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 35252040 - 35251961
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||| | ||| |||| |||||||||||||||||| |||  ||| |||||||||  | ||||||||||||||||||    
T  35252040 tctcaaaattatagtcgtttgagatttgtgcatgattttcaagaaaataattaattgtggttatttcaatgataaaatta 35251961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 41711426 - 41711505
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||| || ||||||||||| ||||||||  ||||||| || ||||||||||| | ||||||| |||| ||||||||    
T  41711426 tctcaaaacaatagttgtttaaggtttgtgcacaatttttatggaaatgattaattatgttgattttaatggtaaaatta 41711505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 42616889 - 42616952
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||||||||||||| |||| | ||||||||| ||| |||||||||||| ||||||||    
T  42616889 gtttaagttttgtgcatgattattaaagaaatgattaactgtgttgatttcaatggtaaaatta 42616952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 6643654 - 6643712
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||| ||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  6643654 tttgagcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 6643712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 32884936 - 32884870
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||  ||||||||||||| |||||||||||| || ||||||||    
T  32884936 gtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtagaattagta 32884870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 34360782 - 34360724
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||| |||| |||| | ||||||||||||| |||||||||||| |||||||||||    
T  34360782 tttgtgcacgattattaaagaaatgattaattgtattgatttcaatggtaaaattagta 34360724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 40122840 - 40122906
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||| ||||||||||||  ||||||| |||| |||||||||||    
T  40122840 gtttaagctttgtgcacgattattaaggaaatgattaattgcgttgattttaatgttaaaattagta 40122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 43237378 - 43237312
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| ||| |||| |||| |||||| ||||||||||||| || ||||||||| |||||||||||    
T  43237378 gtttaaggtttatgcacgattattaaggaaatgattaattgtgtttatttcaatggtaaaattagta 43237312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 51625210 - 51625152
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||| |||| |||||  ||||||||||||| |||||||||||| |||||||||||    
T  51625210 tttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagta 51625152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 2066935 - 2066854
Alignment:
Q  161 aaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||| |||||||  ||| |||| ||||||||||    
T  2066935 aaataatagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgattttgatggtaaagttagtattat 2066854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 3670026 - 3669965
Alignment:
Q  160 aaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgattt 221  Q
    ||||||| ||| ||||||||||| ||||||||||||||   ||||||||||||| |||||||    
T  3670026 aaaataatagtcgtttaagatttatgcatgatttttaaaaaaatgattaattgtgttgattt 3669965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 4972695 - 4972642
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaat 225  Q
    |||||||||||||||| |||| |||| | ||||||||||||| |||||||||||    
T  4972695 gtttaagatttgtgcacgattattaatgaaatgattaattgtgttgatttcaat 4972642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 17237283 - 17237348
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||| ||||||||||||| |||||  ||| ||||||||| |||||| ||||| |||||||||||    
T  17237283 tttaaggtttgtgcatgattattaagaaaataattaattgtgttgattgcaatggtaaaattagta 17237348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 27880214 - 27880294
Alignment:
Q  158 tcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| ||| ||||||| |||||  |||||||||||   |||||||| |||| |||||||||||| ||||||||||||    
T  27880214 tcaaaataatagtcgtttaaggtttgtatatgatttttaaataaatgatta-ttgtgttgatttcaatggtaaaattagtat 27880294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 30192354 - 30192277
Alignment:
Q  158 tcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||||  | |||||||  ||||| || ||||||||||  ||||||||||||| ||||||||||| |||||||||    
T  30192354 tcaaaataatcgctgtttaatgtttgtacacgatttttaagaaaatgattaattgtgttgatttcaattataaaatta 30192277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 53412257 - 53412176
Alignment:
Q  158 tcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| ||||||||| |||||  | | ||||||||||  || |||||||| | |||||||||||| ||||||||||||    
T  53412257 tcaaaataatagttgtttacgatttacgtacgatttttaagaaaacgattaattttattgatttcaatggtaaaattagtat 53412176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 28500885 - 28500940
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||||    
T  28500885 tttgtgcacgattattaaggaaatgattgattgtgttgatttcaatggtaaaatta 28500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 35311209 - 35311272
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||| |||||| ||||||||||| | || ||||||||| ||||||||    
T  35311209 gtttaaggtttgtgcacgattattaaggaaatgattaattatgttaatttcaatggtaaaatta 35311272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 38405088 - 38405151
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||| |||||| ||||||||||| | ||||||| |||| ||||||||    
T  38405088 gtttaaggtttgtgcacgattattaaggaaatgattaattctgttgatttaaatggtaaaatta 38405151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 46396869 - 46396932
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||  |||||  ||||||||||||| |||||||||||| ||||||||    
T  46396869 gtttaaggtttgtgcacgatcattaagtaaatgattaattgtgttgatttcaatggtaaaatta 46396932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 49428328 - 49428391
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||| |||| |||| |||||| |||||||| |||| |||||||||||| ||||||||    
T  49428328 gtttaaggtttttgcacgattattaaggaaatgattatttgtgttgatttcaatggtaaaatta 49428391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 49579172 - 49579235
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttga-tttcaatgataaaattagtattat 242  Q
    ||||||||||||||||||   ||||||||||||| |||| ||| ||||||||||||| ||||||    
T  49579172 tttgtgcatgatttttaaataaatgattaattgtgttgatttttaatgataaaattattattat 49579235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 2942631 - 2942697
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||  | |||| |||| | ||||||||||||| |||||||| |||||||||||||||    
T  2942631 gtttaaggtttgtataagattattaaagaaatgattaattgtgttgatttcgatgataaaattagta 2942697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 44536180 - 44536246
Alignment:
Q  170 ttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattag 236  Q
    ||||||||  ||| |||| |||| |||||| ||||||||||||| ||||||| |||| |||||||||    
T  44536180 ttgtttaaagtttatgcacgattattaaggaaatgattaattgtgttgattttaatggtaaaattag 44536246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 2158004 - 2158053
Alignment:
Q  190 atttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||| | || |||||||||  |||||||||||||||||||||||||    
T  2158004 atttttaatgaaacgattaattgaattgatttcaatgataaaattagtat 2158053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 33790701 - 33790782
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||| |||||| ||| ||||||| ||| |||| |||| |||||  ||||||||||||| |||||||  ||| ||||||||||    
T  33790701 tctctaaataatagtcgtttaaggtttatgcacgattattaagaaaatgattaattgtgttgattttgatggtaaaattagt 33790782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 49747063 - 49747030
Alignment:
Q  205 attaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||| ||||||||||||||||||||||||    
T  49747063 attaattgtgttgatttcaatgataaaattagta 49747030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 6609913 - 6609829
Alignment:
Q  156 tctcaaaataaaagtt-gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| |||| ||||||  ||| |||| |||| |||||| ||||||||||||| |||||||  ||| ||||||||||||    
T  6609913 tctctaaataatagttcgtttaaagtttatgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaattagtat 6609829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 43902367 - 43902319
Alignment:
Q  194 ttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||| ||||||||||| | ||||||| ||||||||||||| ||||||    
T  43902367 ttaaggcaatgattaattatgttgattttaatgataaaattaatattat 43902319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 47358943 - 47358999
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattag 236  Q
    |||||||||||| | ||||  ||| ||| ||||| ||||||||||||||||||||||    
T  47358943 tttgtgcatgatgtctaagaaaattattgattgtgttgatttcaatgataaaattag 47358999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 32440292 - 32440213
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| ||| ||| ||| |||||||||||||||||| | ||||||||||||| || ||||||||||||||||||    
T  32440292 tctcaaaataatagtcgttaaaggtttgtgcatgatttttaaagaaatgattaattgtgttaatttcaatgataaaatta 32440213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 38508149 - 38508232
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||  ||||||||||||| || ||||||||| ||||||||||||    
T  38508149 tctcaaaataatagtcgtttaagatttgtgctcgatttttaagaaaatgattaattgtgttaatttcaatggtaaaattagtat 38508232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 8698447 - 8698379
Alignment:
Q  169 gttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||||||| |||||||| |||| |||| | ||||||||||||| |||||||||||| ||||||||||    
T  8698447 gttgtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaatggtaaaattagt 8698379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 843588 - 843509
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||| ||||| | ||||||||| |||||||| |||| |||||  ||||||||||| | |||||||||||||||||||||    
T  843588 tctcacaataataattgtttaaggtttgtgcacgattattaagaaaatgattaattttgttgatttcaatgataaaatta 843509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 9515881 - 9515814
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||||  ||||||||||||| |||||||||||| ||||||||||||    
T  9515881 gtttaaggtttgtgcacgattattaagataatgattaattgtgttgatttcaatggtaaaattagtat 9515814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 15439299 - 15439364
Alignment:
Q  174 ttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||| |||||||| ||| ||||||| ||||||||||||| || ||||||||| ||||||||||||    
T  15439299 ttaagttttgtgcacgatatttaaggaaatgattaattgtattaatttcaatggtaaaattagtat 15439364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 3076696 - 3076656
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagtatta 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  3076696 aatgattaattgtgttgatttcaatgataaaattagtatta 3076656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 8724986 - 8725050
Alignment:
Q  171 tgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| |||||||||||| ||||||||    
T  8724986 tgtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaatggtaaaatta 8725050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 27542930 - 27542867
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||||    
T  27542930 gtttaaggtttgtgcacgattattaaggaaatgattgattgtgttgatttcaatggtaaaatta 27542867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 29570527 - 29570464
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||||||||||| |||| |||| | ||||||||||||| ||||||| |||| ||||||||    
T  29570527 gtttaagatttgtgcacgattattaaagaaatgattaattgtgttgattttaatgttaaaatta 29570464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 2232051 - 2232117
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||  ||||| ||||||| |||||||||||| |||||||||||    
T  2232051 gtttaaggtttgtgcacgattattaagaaaatgaataattgtgttgatttcaatggtaaaattagta 2232117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 4818686 - 4818620
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||| ||| ||||||||| |||||||||||  |||||||||||    
T  4818686 gtttaaggtttgtgcacgattattaaggaaataattaattgtgttgatttcaattgtaaaattagta 4818620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 15818458 - 15818524
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| ||| |||| |||| |||||| |||| |||||||| |||||||||||| |||||||||||    
T  15818458 gtttaaggtttatgcacgattattaaggaaatgtttaattgtgttgatttcaatggtaaaattagta 15818524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 40530202 - 40530268
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| | |||||| |||| |||||  ||||||||||||| |||||||||||| |||||||||||    
T  40530202 gtttaaggtctgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagta 40530268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 42922845 - 42922894
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgattt 221  Q
    ||||||||||||||||||||| |||||  ||||||||||||| |||||||    
T  42922845 gtttaagatttgtgcatgattattaagaaaatgattaattgtgttgattt 42922894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 37184044 - 37184120
Alignment:
Q  159 caaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||| || | |||||| |||||||| |||||||||   ||||||||||||  |||||||||||| ||||||||    
T  37184044 caaaataatagatctttaagttttgtgcaagatttttaaaaaaatgattaattgagttgatttcaatggtaaaatta 37184120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 1248582 - 1248645
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||||||||||| | || |||||| ||| ||||||| | |||||||||||| ||||||||    
T  1248582 gtttaagatttgtgcacggttattaaggaaattattaattatgttgatttcaatggtaaaatta 1248645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 7827904 - 7827971
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| ||||| || |||| |||||  ||| ||||||||| |||||||||||| ||||||||||||    
T  7827904 gtttaaggtttgtacacgattattaagaaaataattaattgtgttgatttcaatggtaaaattagtat 7827971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 11796128 - 11796215
Alignment:
Q  155 ctctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||||||||| ||| ||||||| |||| |||  || || |||  |||| |||||||| ||||||| ||||||||||||| ||||||    
T  11796128 ctctcaaaataatagtggtttaaggtttgcgcacaatgttaaagaaaatggttaattgtgttgattttaatgataaaattaatattat 11796215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 30512675 - 30512726
Alignment:
Q  184 tgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||| |||||| ||||||||||||| |||||||||||| ||||||||    
T  30512675 tgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaatta 30512726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 30553015 - 30553066
Alignment:
Q  184 tgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||| |||||| ||||||||||||| |||||||||||| ||||||||    
T  30553015 tgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaatta 30553066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 41478978 - 41478897
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||| |||||| ||| || |||| |||||||  ||||||||||  |||||||||||||  | ||||||||| ||||||||||    
T  41478978 tctctaaataatagtcgtctaaggtttgtgcgcgatttttaagaaaatgattaattgtgcttatttcaatggtaaaattagt 41478897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 29856180 - 29856119
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||||||||||| |||| |||||| ||| |  |||||  |||||||||||||||||||||    
T  29856180 gtttaagatttgtgcacgattattaaggaaataa--aattgcgttgatttcaatgataaaatta 29856119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 41492448 - 41492372
Alignment:
Q  161 aaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||| ||| || |||| |||||||  ||||||||||  |||||||||||||  | ||||||||| ||||||||||    
T  41492448 aaataatagtcgtctaaggtttgtgcgcgatttttaagaaaatgattaattgtgcttatttcaatggtaaaattagt 41492372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 1778777 - 1778714
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  1778777 gtttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaatgataaaatta 1778714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 12736540 - 12736619
Alignment:
Q  160 aaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| ||||||||||  |||||||| ||||||||||| ||||||||||||| ||||||  |||||||||||||||||    
T  12736540 aaaataatagttgtttaaagtttgtgcacgatttttaaggaaatgattaattgtgttgattctaatgataaaattagtat 12736619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 14194702 - 14194624
Alignment:
Q  160 aaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| ||| ||||||| |||||||| ||||||||| | |||||| |||||| ||||||||||||||||||||||||    
T  14194702 aaaataacagtcgtttaaggtttgtgcacgatttttaaagaaatgatcaattgtgttgatttcaatgataaaattagta 14194624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 38795495 - 38795402
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattatctaccca 249  Q
    ||||||||||| ||| ||||||  |||||||| ||| ||||||| ||||||||||||| || ||||||||| |||||||||||| || ||||||    
T  38795495 tctcaaaataatagtcgtttaatgtttgtgcacgatatttaaggaaatgattaattgtgtttatttcaatggtaaaattagtatcatttaccca 38795402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 40462463 - 40462386
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaat 233  Q
    ||||||||||| | ||||||||| |||| || |||||||||||  ||||||||||||||||||||||| |||||||||    
T  40462463 tctcaaaataataattgtttaaggtttgagcgtgatttttaagaaaatgattaattgttttgatttcagtgataaaat 40462386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 10366606 - 10366689
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||| ||||||| |||||||| |||| |||||  ||||||||||||| |||||||||||| ||||||||||||    
T  10366606 tctctaaataacagtcgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtat 10366689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 8679034 - 8679100
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||| |||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  8679034 gtttaagatttatgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 8679100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 43253843 - 43253909
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  43253843 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 43253909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 30861529 - 30861470
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaa 232  Q
    ||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||||    
T  30861529 gtttaagatttgtgcatgattttta-ggaaattattaattgtgttgatttcaatgataaaa 30861470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 37772944 - 37773007
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| |||||| ||||| ||||||||    
T  37772944 gtttaaggtttgtgcatgattattaaggaaatgattaattgtattgattacaatggtaaaatta 37773007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 37312085 - 37312019
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| ||| |||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  37312085 gtttaaggtttatgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 37312019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 51837940 - 51838002
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||| ||||||||||| | |||||  ||||||||||||| |||||||||||||||||||||    
T  51837940 tttaaggtttgtgcatgagtattaagtaaatgattaattgtgttgatttcaatgataaaatta 51838002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 24569082 - 24569150
Alignment:
Q  174 ttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||||| |||| |||| |||||  ||||||||||||| |||||||||||| |||||||| ||||||    
T  24569082 ttaagatttatgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattaatattat 24569150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 37695629 - 37695709
Alignment:
Q  156 tctcaaaataaaagttgtttaagattt-gtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||||| ||| ||||||| ||| ||||| |||| |||||| ||||||||||||| |||||||||||| ||||||||    
T  37695629 tctctaaataatagtcgtttaaggttttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaatta 37695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 19609450 - 19609371
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| | | |||||||||||||| |||| |||||||  |||||||| |||| |||||||||||  ||||||||    
T  19609450 tctcaaaataataatcgtttaagatttgtgtatgaattttaagaaaatgattatttgtgttgatttcaatcgtaaaatta 19609371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 19823150 - 19823079
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| |||||||| |||| |||||| ||||||||||||| |||||||  ||| || |||||||||    
T  19823150 agttgtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattttgatggtagaattagtat 19823079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 30190640 - 30190707
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| | || | |||| ||||||||||||| |||||||||||| ||||||||||||    
T  30190640 gtttaaggtttgtgcacggttatgaaggaaatgattaattgtgttgatttcaatggtaaaattagtat 30190707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 44301713 - 44301630
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||||||  || ||||||| |||||||  || |||||||| |||  |||||| | |||||||||||||||||||||||||    
T  44301713 tctcaaaataatggtcgtttaaggtttgtgcccgacttttaaggaaatatttaattatgttgatttcaatgataaaattagtat 44301630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 33491063 - 33491125
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||  |||||||    
T  33491063 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatagtaaaatt 33491125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 27471470 - 27471405
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||||||||||||| |||| |||||  ||||||||||| | |||||||||||| | ||||||||    
T  27471470 gtttaagatttgtgcacgattattaagaaaatgattaattatgttgatttcaatggtgaaattagt 27471405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 28690760 - 28690825
Alignment:
Q  170 ttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||| |||||||| |||| |||| | ||||||||||||| |||||||||| | ||||||||    
T  28690760 ttgtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgatttcaacggtaaaatta 28690825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 50035198 - 50035263
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||| ||||||||||||| |||||  ||||| ||||| | ||||||||||| ||||||||||||    
T  50035198 tttaaggtttgtgcatgattattaagaaaatgaataattatgttgatttcaataataaaattagta 50035263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 37497627 - 37497560
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| |||| |||| |||||| ||||||| ||||| |||||||  ||| ||||||||||||    
T  37497627 gtttaagatttatgcacgattattaaggaaatgatttattgtgttgattttgatggtaaaattagtat 37497560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 45811802 - 45811727
Alignment:
Q  160 aaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||||||||||| ||||||  |||| ||||||  ||||||||||| | ||||||| |||| ||||||||    
T  45811802 aaaataatagttgtttaaggtttgtgtgtgatatttaagaaaatgattaattatgttgattttaatggtaaaatta 45811727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 34750630 - 34750564
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||| |||||||| ||||||| | | ||||||| ||||| ||||||| |||| ||||||||||||    
T  34750630 tttaaggtttgtgcacgatttttgatgaaatgattgattgtgttgattttaatggtaaaattagtat 34750564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 7757640 - 7757599
Alignment:
Q  194 ttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  7757640 ttaaggaaaagattaattgtgttgatttcaatgataaaatta 7757599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 11632214 - 11632150
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||||||| |||| ||||   ||||||||||||| |||||||||| | |||||||||||    
T  11632214 tttaagatttgtgcacgattattaaaa-aatgattaattgtgttgatttcaacggtaaaattagta 11632150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 17652899 - 17652814
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtatta 241  Q
    |||| |||||| ||| |||| || ||| |||| |||| |||||| ||||||||||||| |||||||  ||| ||||| ||||||||    
T  17652899 tctctaaataatagtcgtttgaggtttatgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaactagtatta 17652814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 19612045 - 19611980
Alignment:
Q  170 ttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||  |||||| | ||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  19612045 ttgtttaaagtttgtgtacgatttttaagaaagtgattaattgtgttgatttcaatgttaaaatta 19611980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 5322915 - 5322980
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| |||||||| |||| ||||   ||||||||||| | ||||||||| |||||||||||    
T  5322915 agttgtttaaggtttgtgcacgattattaaa--aatgattaattatgttgatttcagtgataaaatta 5322980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 23004384 - 23004428
Alignment:
Q  194 ttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||| ||||||||||||| | |||||||||| |||||||||||    
T  23004384 ttaaggaaatgattaattgtgtcgatttcaatggtaaaattagta 23004428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 30682065 - 30682113
Alignment:
Q  191 tttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| |||||||||||||||| |||| |||| |||||| |||||    
T  30682065 tttttaaggaaatgattaattgttttaattttaatgttaaaatgagtat 30682113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 21216082 - 21216147
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||    
T  21216082 gtttaaggtttgtgcatgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagt 21216147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 7173066 - 7172983
Alignment:
Q  155 ctctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||| |||| | ||||||||||| |||||| || ||| |||| | ||||||||||||| ||||||||||||||||||||||||    
T  7173066 ctctctaaattatagttgtttaaggtttgtgtatcattattaaagaaatgattaattgtgttgatttcaatgataaaattagta 7172983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 39405897 - 39405830
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| || ||||||||||||||||||||||    
T  39405897 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttaatttcaatgataaaattagtat 39405830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 1875573 - 1875639
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  1875573 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 1875639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 9839825 - 9839877
Alignment:
Q  190 atttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  9839825 atttttaaggaaatgattaaatgttttgatttcaacgataaaattagtattat 9839877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 27294024 - 27294107
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||| | | | ||||||||| || |||| |||||||||||||||||    
T  27294024 tctcaaaataatagttggttaaggtttgtgcacgatttttaaagaagttattaattgtgttcatttgaatgataaaattagtat 27294107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 39482750 - 39482684
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||||||||||| |||| |||||  ||||||||||||| |||||||||| | |||||||||||    
T  39482750 gtttaagatttgtgcacgattattaagaaaatgattaattgtgttgatttcaagggtaaaattagta 39482684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 42972490 - 42972552
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||| |||||||| |||| |||||  |||||||||||||||||||||||||| ||||||||    
T  42972490 tttaaggtttgtgcacgattattaagaaaatgattaattgttttgatttcaatggtaaaatta 42972552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 31082758 - 31082689
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    ||||||||| | |||||||| |||  |||||| ||||||||||||| ||||||| |||||||||||||||    
T  31082758 agttgtttatggtttgtgcacgataattaaggaaatgattaattgtcttgattttaatgataaaattagt 31082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 51263 - 51181
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||||||||||| |||||||| |||| |||||  ||||||||||||| ||||||| |||| |||||| |||||    
T  51263 tctctaaataatagttgtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgattttaatg-taaaataagtat 51181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 17719223 - 17719309
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||| |||||| ||| |||||||||||||||| |||| ||||   |||||||||||||  |||||| |||| |||| ||||||||||    
T  17719223 tctctaaataatagtcgtttaagatttgtgcacgattattaaaaaaatgattaattgtaatgattttaatggtaaagttagtattat 17719309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 29226208 - 29226278
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||||||| ||||| ||| |||||  ||||||||||||| |||||||  ||| |||||||||||    
T  29226208 agttgtttaagatttatgcataattattaagaaaatgattaattgtgttgattttgatggtaaaattagta 29226278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 31331522 - 31331473
Alignment:
Q  193 tttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||| ||||||    
T  31331522 tttaaggaaatgattaattgtattgatttcaattataaaattattattat 31331473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 39329430 - 39329370
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    |||||| ||||||||  |||||||||  ||||||||||||| ||||||||||||||||||||    
T  39329430 tttaagttttgtgcacaatttttaaga-aatgattaattgtgttgatttcaatgataaaatt 39329370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 1739772 - 1739709
Alignment:
Q  175 taagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||| |||||| | |||| |||||| ||| ||||||||| |||||||||||| |||||||||||    
T  1739772 taaggtttgtgtacgattattaaggaaataattaattgtgttgatttcaatggtaaaattagta 1739709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 4428317 - 4428395
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| ||| ||||||| ||| || || |||||||||  |||||||| |||| ||||||| |||||||||||||    
T  4428317 tctcaaaataatagtcgtttaaggtttatgtat-atttttaagaaaatgattatttgtgttgattttaatgataaaatta 4428395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 10179928 - 10179995
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||||  ||||| || |||| |||||||||||| ||||||||||||    
T  10179928 gtttaaggtttgtgcacgattattaagaaaatgagtagttgtattgatttcaatggtaaaattagtat 10179995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 17824055 - 17823989
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||| || |||||||||| || | ||||| || |||||||||||||||||||||||||    
T  17824055 gtttaaggtttgtgtattatttttaaggaaaag-ttaatcgtgttgatttcaatgataaaattagtat 17823989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 32476438 - 32476359
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||| ||||| ||||||| |||||||| | || |||||  ||||||| ||| | |||||||||||||||||||||    
T  32476438 tctctaaattaaagtcgtttaaggtttgtgcacggttattaagaaaatgattgattctgttgatttcaatgataaaatta 32476359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 34948668 - 34948735
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||||||| ||  ||| |||||| ||||||||||||| ||||||| |||  ||||||||||||    
T  34948668 gtttaagatttgtacacaattattaaggaaatgattaattgtgttgatttaaatagtaaaattagtat 34948735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 45425647 - 45425710
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| ||| ||||||||| |||||  ||||||||||||| ||||||| |||| ||||||||    
T  45425647 gtttaagttttatgcatgattattaagaaaatgattaattgtgttgattttaatggtaaaatta 45425710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 5356725 - 5356671
Alignment:
Q  181 ttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||||| |||| ||| |||||||| |||| ||||||| |||||||||||||    
T  5356725 ttgtgcatgactttttaggaaatgattagttgtgttgattttaatgataaaatta 5356671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 11976917 - 11976971
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatg 226  Q
    ||||||| ||||||||||||| ||| || ||| ||||||||| ||||||||||||    
T  11976917 gtttaaggtttgtgcatgattattatggaaatcattaattgtgttgatttcaatg 11976971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 36967507 - 36967433
Alignment:
Q  161 aaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||| |||||||  ||| ||||||||    
T  36967507 aaataatagtcgtttaaggtttatgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaatta 36967433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 39329153 - 39329087
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||| |||||| |  |||||||||  ||||||||||||| || |||| |||||||||||||||||    
T  39329153 tttaagttttgtgtacaatttttaagaaaatgattaattgtgttaattttaatgataaaattagtat 39329087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 35732368 - 35732327
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaa 197  Q
    ||||||||||| | ||||||||| ||||||||||||||||||    
T  35732368 tctcaaaataataattgtttaagttttgtgcatgatttttaa 35732327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 44761504 - 44761541
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  44761504 aatgattaattgtgttgatttcaatggtaaaattagta 44761541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 7703128 - 7703200
Alignment:
Q  163 ataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| ||| ||||||  |||||| | |||| |||||| ||| ||||||||| |||||||||||| ||||||||    
T  7703128 ataatagtcgtttaaagtttgtgtaagattattaaggaaataattaattgtgttgatttcaatggtaaaatta 7703200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 34455684 - 34455728
Alignment:
Q  190 atttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    |||||||||| ||||| ||||||| ||||||| ||||||||||||    
T  34455684 atttttaaggaaatgactaattgtgttgattttaatgataaaatt 34455728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 50339 - 50272
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| || ||||||||||||||||||||||    
T  50339 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttaatttcaatgataaaattagtat 50272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 17170 - 17104
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| ||||||||||||| |||||  ||||||||||||| |||||||||||| |||||||||||    
T  17170 gtttaaggtttgtgcatgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagta 17104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 2850876 - 2850938
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||| ||||||    
T  2850876 tttgtgcatgattattaaggaaatgattaattatgttgatttcaatgataaaattaatattat 2850938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 16904537 - 16904458
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| ||| ||||||| ||||||||  |||||||||  ||||||||||||| |||||||||||  ||||||||    
T  16904537 tctcaaaataatagtcgtttaaggtttgtgcaaaatttttaagaaaatgattaattgtgttgatttcaatagtaaaatta 16904458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 26974171 - 26974108
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||| ||||||||    
T  26974171 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaatta 26974108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 34947658 - 34947579
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||||| ||| ||||||| |||||||||| || |||| | ||||||||||||| |||||||||||| ||||||||    
T  34947658 tctctaaataatagtcgtttaaggtttgtgcatgtttattaaagaaatgattaattgtgttgatttcaatggtaaaatta 34947579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 7463355 - 7463289
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||  ||||||| | || |||||| ||||||||||||| ||||||||||||||||||||||||    
T  7463355 gtttaaggattgtgcacggttattaaggaaatgattaattgtgttgatttcaatgataaaattagta 7463289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 8592427 - 8592493
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| ||||||||||||| |||| | ||||||||||||| |||||||||||| | |||||||||    
T  8592427 gtttaaggtttgtgcatgattattaaagaaatgattaattgtgttgatttcaatggttaaattagta 8592493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 28103875 - 28103811
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattag 236  Q
    ||||||| |||||||| |||| |||||  ||||||||||||| |||||||||||| |||||||||    
T  28103875 gtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattag 28103811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 21759971 - 21760038
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| ||||||||||||| |||||  ||||||||||||| |||||||  ||| ||||||||||||    
T  21759971 gtttaaggtttgtgcatgattattaagaaaatgattaattgtgttgattttgatggtaaaattagtat 21760038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 44180363 - 44180280
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||| ||||||| ||| | || |||| |||||  ||||||||||||| |||||||||||| ||||||||||||    
T  44180363 tctctaaataatagtcgtttaaggtttatacacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagtat 44180280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 5524514 - 5524456
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||| |||| |||||  ||||||||||||| |||||||||||| |||||||||||    
T  5524514 tttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagta 5524456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 34100530 - 34100600
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||||||||||||  | |||| |||||  ||||||||||||| |||||||||||  |||||||||||    
T  34100530 agttgtttaagatttgtcaacgattattaagaaaatgattaattgtgttgatttcaatagtaaaattagta 34100600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 2459603 - 2459546
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||||| |||| |||||| ||||||||||||| |||||||||| | ||||||||||    
T  2459603 tttgtgcacgattattaaggaaatgattaattgtgttgatttcaacggtaaaattagt 2459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 12631446 - 12631381
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||| |||||||| |||| |||||| ||| ||||||||| |||||||||||  |||||||||||    
T  12631446 tttaaggtttgtgcacgattattaaggaaataattaattgtattgatttcaatagtaaaattagta 12631381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 33819339 - 33819290
Alignment:
Q  189 gatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  33819339 gattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 33819290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 83543 - 83460
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||| ||||||| ||| ||||  ||| |||||| ||||||||||||| |||||||  ||| ||||||||||||    
T  83543 tctctaaataatagtcgtttaaggtttatgcacaattattaaggaaatgattaattgtgttgattttgatggtaaaattagtat 83460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 3178187 - 3178254
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| ||||||||||||| |||||  ||||||| ||||| |||||||  ||| ||||||||    
T  3178187 agttgtttaaggtttgtgcatgattattaagtaaatgattgattgtgttgattttgatggtaaaatta 3178254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 9786146 - 9786067
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||||| ||| ||||||| | |||||| |||| |||||| ||||||||||||| |||||||  ||| ||||||||    
T  9786146 tctctaaataatagtcgtttaaggtctgtgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaatta 9786067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 22738843 - 22738776
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| ||| |||| |||| |||| | ||||||||||||| | |||||||||| ||||||||||||    
T  22738843 gtttaaggtttatgcacgattattaaagaaatgattaattgtgtagatttcaatggtaaaattagtat 22738776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 11373415 - 11373481
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||  ||||||| |||| |||||| |||| |||||||| |||||||| ||| |||||||||||    
T  11373415 gtttaaggattgtgcacgattattaaggaaatgtttaattgtgttgatttcgatggtaaaattagta 11373481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 13962100 - 13962038
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||| ||| |||| | || |||||| ||||||||||||| ||||||| |||||||||||||    
T  13962100 tttaaggtttatgcacgtttattaaggaaatgattaattgtgttgattttaatgataaaatta 13962038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 32346035 - 32346113
Alignment:
Q  168 agttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattatctac 246  Q
    ||||||||||| |||||| | | || |||||| ||| ||| ||||| |||||||||||| |||||||| ||| ||||||    
T  32346035 agttgtttaaggtttgtgtacggttattaaggaaataattgattgtgttgatttcaatggtaaaattaatatcatctac 32346113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 24516305 - 24516342
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  24516305 aatgattaattgtgttgatttcaatggtaaaattagta 24516342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 48608992 - 48608935
Alignment:
Q  184 tgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtatta 241  Q
    ||||||||| |||||| ||||||||||||| |||||||  ||| ||||| ||||||||    
T  48608992 tgcatgattattaaggaaatgattaattgtgttgattttgatggtaaaactagtatta 48608935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 19271749 - 19271785
Alignment:
Q  201 aatgattaattgttttgatttcaatgataaaattagt 237  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  19271749 aatgattaattgtgttgatttcaatgatcaaattagt 19271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 41506054 - 41506118
Alignment:
Q  174 ttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||| ||| |||| |||| |||||| ||||||||||||| || |||| |||| |||||||||||    
T  41506054 ttaaggtttatgcacgattattaaggaaatgattaattgtgttaattttaatggtaaaattagta 41506118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 31894189 - 31894255
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||||||||| |||||| |||||  ||||||||||||| |||||||||||| |||||||||||    
T  31894189 gtttaagatttgtgtatgattattaagaaaatgattaattgtgttgatttcaatggtaaaattagta 31894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 1063600 - 1063652
Alignment:
Q  190 atttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  1063600 atttttaagaaaatgattaattgtgttgatttcaatgataaaattagtattat 1063652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 7920389 - 7920310
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| |   |||||||||||||||| ||||||||| | ||||||||||| | |||||||||||| ||||||||    
T  7920389 tctcaaaataatatccgtttaagatttgtgcacgatttttaaagaaatgattaattttgttgatttcaatggtaaaatta 7920310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 3291731 - 3291817
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||| |||||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||| | ||||| |||| ||| |||||||||||    
T  3291731 tctctaaataatagtcgtttaaggtttttgcacgattattaaggaaatgattaattgtatcgattttaatggtaatattagtattat 3291817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 3720220 - 3720282
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    ||||||| |||||||| |||| |||| | ||||||||||||| ||||||||||| ||||||||    
T  3720220 gtttaaggtttgtgcacgattattaatgaaatgattaattgtgttgatttcaattataaaatt 3720282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 32440608 - 32440694
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||| |||||| ||| ||||||||||| |||| | || || ||| ||||||||||||| |||||||  ||| |||||||||||||||    
T  32440608 tctctaaataatagtcgtttaagatttatgcacggttatttaggaaatgattaattgtgttgattttgatggtaaaattagtattat 32440694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 13909551 - 13909494
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||||| |||| |||||| ||||||||| ||| |||||||||||| ||||||||||    
T  13909551 tttgtgcacgattattaaggaaatgattaaatgtgttgatttcaatggtaaaattagt 13909494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 16406798 - 16406835
Alignment:
Q  205 attaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16406798 attaattgtgttgatttcaatgataaaattagtattat 16406835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 15582430 - 15582351
Alignment:
Q  160 aaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| ||| |||||||||||||  |  || |||||  |||||||||||||| |||||||||||| |||||| |||||    
T  15582430 aaaataatagtcgtttaagatttgtagacaatatttaaatgaatgattaattgtgttgatttcaatggtaaaatcagtat 15582351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 21804516 - 21804575
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||||| |||||||| | ||||||||||||| || ||||||||  ||||||||||||    
T  21804516 tttgtgcataatttttaaagaaatgattaattgtattaatttcaattgtaaaattagtat 21804575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 1225182 - 1225112
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    |||||||| ||||||| || |||||| | ||||||||||||| ||||||| |||  |||||||| ||||||    
T  1225182 gtttaagagttgtgcacgagttttaaagaaatgattaattgtgttgatttaaatagtaaaattaatattat 1225112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 28101327 - 28101405
Alignment:
Q  161 aaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||| ||| |||||| |||| | ||| ||||||||| |||  ||| ||| | |||||||||||||||||||||||||    
T  28101327 aaataatagtcgtttaaaatttatacataatttttaagagaagtatttattatgttgatttcaatgataaaattagtat 28101405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 34300121 - 34300060
Alignment:
Q  181 ttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtattat 242  Q
    ||||| ||| ||||||| |  ||||||  |||||||||||| ||||||||||||||||||||    
T  34300121 ttgtgtatggtttttaaagagatgatttgttgttttgatttgaatgataaaattagtattat 34300060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 8947038 - 8947096
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  8947038 tttgtgcataattattaaggaaatgattaattgtgttgatttcaatgataaaattagta 8947096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 18853164 - 18853236
Alignment:
Q  158 tcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataa 230  Q
    ||||||||| ||| |||||| ||||||||| ||| ||||||| ||| ||||||||| ||||||||||||||||    
T  18853164 tcaaaataatagtcgtttaaaatttgtgcacgatctttaaggaaataattaattgtgttgatttcaatgataa 18853236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 19937812 - 19937749
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||| ||||||||    
T  19937812 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaatta 19937749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 39691625 - 39691562
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||| |||||||| |||| |||||  ||||||||||||| |||||||||||||||||||||    
T  39691625 gtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatgataaaatta 39691562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 45235732 - 45235653
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||||| ||| ||||||| |||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||||    
T  45235732 tctctaaataatagtcgtttaaggtttgtgcacgattattaaggaaatgattgattgtgttgatttcaatggtaaaatta 45235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 17695465 - 17695403
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||| |||||||    
T  17695465 gtttaaggtttgtgcacgattattaaggaaatgattaattgtattgatttcaatggtaaaatt 17695403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 15435498 - 15435447
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaa 231  Q
    |||||||||||||||||||  ||| ||||||||| |||||||||||||||||    
T  15435498 tttgtgcatgatttttaagaaaataattaattgtgttgatttcaatgataaa 15435447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 16377634 - 16377697
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||||||||||| |||| |||| | ||||||||||||| |||||| ||||| ||||||||    
T  16377634 gtttaagatttgtgcacgattattaaagaaatgattaattgtgttgattacaatggtaaaatta 16377697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 27501516 - 27501583
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||| |||||| |||||| |||||| |||| | |||||||||||| ||||||||||||    
T  27501516 gtttaaggtttgtgtatgattattaaggaaatgataaattatgttgatttcaatggtaaaattagtat 27501583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 36794435 - 36794352
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||| ||||||||||  |||||| || |||||| ||||||||||||| |||||||  ||| ||||||||||||    
T  36794435 tctctaaataatagtcgtttaagattgatgcatggttattaaggaaatgattaattgtgttgattttgatggtaaaattagtat 36794352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 26607946 - 26608008
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatt 234  Q
    ||||||| |||||||| |||| |||||  ||||||||||||| |||||||||||| |||||||    
T  26607946 gtttaaggtttgtgcacgattattaagaaaatgattaattgtgttgatttcaatggtaaaatt 26608008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 35314010 - 35313956
Alignment:
Q  184 tgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||| |||| |||||| ||||||||||||| |||||||||||| |||||||||||    
T  35314010 tgcacgattattaaggaaatgattaattgtgttgatttcaatggtaaaattagta 35313956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 5789627 - 5789691
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||| |||||||| |||| |||||| ||||||||||||| |||| ||||||  ||||||||||    
T  5789627 tttaaggtttgtgcacgattattaaggaaatgattaattgtattgaattcaatagtaaaattagt 5789691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 31448671 - 31448735
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattag 236  Q
    ||||||| |||||||| |||| |||||| ||||||||||||| |||||||  ||| |||||||||    
T  31448671 gtttaaggtttgtgcacgattattaaggaaatgattaattgtgttgattttgatggtaaaattag 31448735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 16463840 - 16463757
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||| |||||| ||| ||||||| ||| |||| | || |||||| ||||||||||||| |||||||  ||| ||||||||||||    
T  16463840 tctctaaataatagtcgtttaaggtttatgcacggttattaaggaaatgattaattgtgttgattttgatggtaaaattagtat 16463757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 16806016 - 16805949
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||| | ||||||||||||| ||||||| |||  ||||||||||||    
T  16806016 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattttaatagtaaaattagtat 16805949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 16845297 - 16845230
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    ||||||| |||||||| |||| |||| | ||||||||||||| ||||||| |||  ||||||||||||    
T  16845297 gtttaaggtttgtgcacgattattaaagaaatgattaattgtgttgattttaatagtaaaattagtat 16845230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 43410553 - 43410498
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||||||| |||| |||||| ||| ||||||||| ||||| |||||||||||||||    
T  43410553 tttgtgcacgattattaaggaaattattaattgtgttgatatcaatgataaaatta 43410498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 3323264 - 3323330
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    ||||||| |||||||| |||| |||    ||||||||||||| |||||||||||| |||||||||||    
T  3323264 gtttaaggtttgtgcacgattattataaaaatgattaattgtgttgatttcaatggtaaaattagta 3323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 43115788 - 43115846
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagta 238  Q
    |||||||  |||| |||| | ||||||||||||| ||||||||||||||||| ||||||    
T  43115788 tttgtgcgcgattattaaagaaatgattaattgtgttgatttcaatgataaagttagta 43115846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 25637631 - 25637551
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||| |||||| ||||||||||| ||| |||| |||| | |||| ||||||||||||| |||||||  ||| ||||||||||    
T  25637631 tctctaaataatagttgtttaaggtttatgcacgattat-aaggaaatgattaattgtgttgattttgatggtaaaattagt 25637551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 41220954 - 41220991
Alignment:
Q  202 atgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  41220954 atgattaattgtgttgatttcaattataaaattagtat 41220991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 16233 - 16170
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||||| || |||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  16233 gtttaagatttgttcacgattattaaggaaatgattaattgtgttgattttaatgataaaatta 16170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 2176 - 2097
Alignment:
Q  156 tctcaaaataaaagttgtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    |||| |||||||||| ||||||| ||  |||| |||| |||||| | ||||||||||| || ||||||||||||||||||    
T  2176 tctctaaataaaagtcgtttaaggttcatgcacgattattaaggaagtgattaattgtgttaatttcaatgataaaatta 2097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 6273 - 6332
Alignment:
Q  180 tttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagtat 239  Q
    |||||||| ||||||||| | ||||||||||||| ||||||  |||||||||||||||||    
T  6273 tttgtgcacgatttttaacgaaatgattaattgtgttgattctaatgataaaattagtat 6332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 105819 - 105756
Alignment:
Q  172 gtttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaatta 235  Q
    ||||||||||| ||||||||| |||||  ||||||||||||| || ||||||||| ||||||||    
T  105819 gtttaagatttatgcatgattattaagtaaatgattaattgtgtttatttcaatggtaaaatta 105756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 34000 - 34064
Alignment:
Q  173 tttaagatttgtgcatgatttttaagggaatgattaattgttttgatttcaatgataaaattagt 237  Q
    |||||| |||||||| |||| |||||| ||||||||||||| |||| ||||||  ||||||||||    
T  34000 tttaaggtttgtgcacgattattaaggaaatgattaattgtattgaattcaatagtaaaattagt 34064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University