View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_66 (Length: 310)
Name: NF1243_low_66
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 47894140 - 47894427
Alignment:
| Q |
30 |
attcttctccaagaaaatctcgatacggtgtcccaccggtgaacgtgagggaattagttggcttcatgaggagtgttagggttgatgaatggagtccggt |
129 |
Q |
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| T |
47894140 |
attcttctccaagaaaatctcgatacggtgtcccaccggtgaacgtgagggaattagttggcttcatgaggagtgttagggttgatgaatggagtccggt |
47894239 |
T |
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| Q |
130 |
gtctaagatgggttct------------------ccacgaggtggttttttgagtcttccatcaaactatgaaggggttggtatggagagggtggaatca |
211 |
Q |
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| T |
47894240 |
gtctaagatgggttctgtgtttggttctccacgaccacgaggtggttttttgagtcttccatcaaactatgaaggggttggtatggagagggtggaatca |
47894339 |
T |
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| Q |
212 |
ggaagagatcttagagccaaaatctatgcgaaatttggtaggttgaactcaaacgatggtgttgtttcggtccctgtccctgatattg |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894340 |
ggaagagatcttagagccaaaatctatgagaaatttggtaggttgaactcaaacgatggtgttgtttcggtccctgtccctgatattg |
47894427 |
T |
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