View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_69 (Length: 306)
Name: NF1243_low_69
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 1192357 - 1192554
Alignment:
| Q |
85 |
caatctgcctctaaacacggtcttcttggtggtttgacacatttaagattctattggccgaacaattttacgaggttccggaaaatacaatttgaactgt |
184 |
Q |
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| T |
1192357 |
caatctacctctaaacatgatcttctagggggtttaacacatttcagattctatttgtcgaacaattttgcaaagtttcggcaaatacaattcgaac-gt |
1192455 |
T |
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| Q |
185 |
atatttaaaagctttggataggtatgaacaattttataacagttcggaatatatttttcgaaatatggttcagatcatatttgcgaaacaaagggtattt |
284 |
Q |
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| T |
1192456 |
atatttacagcctttggatagatatgaccaa-tttataacaattcagattatatttgtcgaacaatggttcatattatatttaccgagcaaagggtattt |
1192554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 284
Target Start/End: Complemental strand, 24626554 - 24626398
Alignment:
| Q |
132 |
attctattggccgaacaattttacgaggttccggaaaatacaatttgaactgtat----atttaaaagctttggataggtatgaacaattttataacagt |
227 |
Q |
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| T |
24626554 |
attctatttgccgaacaattttgcgaggtttcggaaaatacaatacaaactgtattttattttttaggctttggataggcatgagcaattttataatagt |
24626455 |
T |
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| Q |
228 |
tcggaatatatttttcgaaatatggttcagatcatatttgcgaaacaaagggtattt |
284 |
Q |
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| T |
24626454 |
ttggattatatttgctaaaatattgttcatattatatttacctaacaaagggtattt |
24626398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 1189872 - 1189843
Alignment:
| Q |
261 |
atatttgcgaaacaaagggtatttcgtaag |
290 |
Q |
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| T |
1189872 |
atatttgcgaaacaaagggtatttcgtaag |
1189843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 4610718 - 4610839
Alignment:
| Q |
118 |
ttgacacatttaagattctattggccgaacaattttacgaggttccggaaaatacaatttgaactgtatatttaaaagctttggataggtatgaacaatt |
217 |
Q |
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| T |
4610718 |
ttgacgcatttctgattctattttcccaacaattttgcgaggtttcggcaaatacactttaatctgtatatttacatgttttggata-gcatgaacaatt |
4610816 |
T |
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| Q |
218 |
ttataacagttcggaatatattt |
240 |
Q |
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| T |
4610817 |
ttataacagtttggattatattt |
4610839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 25689586 - 25689480
Alignment:
| Q |
178 |
gaactgtatatttaaaagctttggataggtatgaacaattttataacagttcggaatatatttttcgaaatatggttcagatcatatttgcgaaacaaag |
277 |
Q |
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| T |
25689586 |
gaactgcatatttacaagctttgaatagacatgagcaattttagaacagttcggattgtatttaccaaaatatagttctgattttatttgccgaacaaag |
25689487 |
T |
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| Q |
278 |
ggtattt |
284 |
Q |
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||||||| |
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| T |
25689486 |
ggtattt |
25689480 |
T |
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