View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_7 (Length: 561)

Name: NF1243_low_7
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_7
NF1243_low_7
[»] chr1 (28 HSPs)
chr1 (321-532)||(38052961-38053172)
chr1 (153-320)||(5049096-5049266)
chr1 (180-321)||(23664435-23664577)
chr1 (153-321)||(22070144-22070316)
chr1 (28-108)||(5049342-5049422)
chr1 (153-320)||(21906021-21906192)
chr1 (28-108)||(34307583-34307663)
chr1 (28-106)||(25095054-25095132)
chr1 (28-81)||(21906293-21906346)
chr1 (260-320)||(27431192-27431252)
chr1 (31-108)||(17967464-17967541)
chr1 (28-81)||(22070417-22070470)
chr1 (29-108)||(27430928-27431007)
chr1 (153-320)||(48999050-48999220)
chr1 (28-81)||(9023128-9023181)
chr1 (260-321)||(42721894-42721954)
chr1 (28-77)||(48596489-48596538)
chr1 (28-81)||(48999318-48999370)
chr1 (260-320)||(26221341-26221400)
chr1 (260-320)||(36296358-36296417)
chr1 (153-320)||(48596636-48596806)
chr1 (260-321)||(1347108-1347168)
chr1 (254-307)||(9022871-9022924)
chr1 (260-305)||(34307849-34307894)
chr1 (28-77)||(44310372-44310421)
chr1 (260-320)||(28946201-28946260)
chr1 (153-231)||(34307737-34307816)
chr1 (28-80)||(12027701-12027754)
[»] scaffold0016 (9 HSPs)
scaffold0016 (157-323)||(87927-88094)
scaffold0016 (157-323)||(88403-88570)
scaffold0016 (157-323)||(88879-89046)
scaffold0016 (157-321)||(89354-89518)
scaffold0016 (157-323)||(87454-87620)
scaffold0016 (28-108)||(87769-87849)
scaffold0016 (28-108)||(89196-89276)
scaffold0016 (28-77)||(88244-88293)
scaffold0016 (28-77)||(88720-88769)
[»] chr8 (24 HSPs)
chr8 (153-320)||(4432362-4432531)
chr8 (153-320)||(16729378-16729544)
chr8 (157-319)||(39905874-39906037)
chr8 (161-320)||(7973280-7973442)
chr8 (153-320)||(1981234-1981404)
chr8 (260-321)||(3762338-3762399)
chr8 (28-81)||(16729644-16729697)
chr8 (260-320)||(45117137-45117197)
chr8 (28-108)||(45117353-45117433)
chr8 (35-108)||(7973125-7973198)
chr8 (28-81)||(31597436-31597489)
chr8 (260-321)||(40971088-40971149)
chr8 (28-108)||(4432208-4432288)
chr8 (28-108)||(7263769-7263849)
chr8 (28-108)||(18327240-18327320)
chr8 (28-81)||(3762611-3762664)
chr8 (28-81)||(39906140-39906193)
chr8 (260-320)||(7264031-7264091)
chr8 (28-81)||(40971356-40971409)
chr8 (260-320)||(6927924-6927983)
chr8 (260-320)||(31597165-31597224)
chr8 (260-320)||(11995100-11995159)
chr8 (28-81)||(11648889-11648942)
chr8 (161-241)||(18327038-18327119)
[»] chr5 (26 HSPs)
chr5 (153-320)||(13490034-13490202)
chr5 (158-320)||(39537683-39537845)
chr5 (153-320)||(42879239-42879408)
chr5 (153-321)||(5578896-5579067)
chr5 (153-320)||(2676608-2676778)
chr5 (28-81)||(13490304-13490357)
chr5 (153-320)||(9409843-9410013)
chr5 (28-108)||(23962737-23962817)
chr5 (28-108)||(39537526-39537606)
chr5 (260-326)||(18888705-18888771)
chr5 (28-108)||(2676852-2676932)
chr5 (28-108)||(18888955-18889035)
chr5 (35-108)||(9409696-9409769)
chr5 (28-81)||(13382737-13382790)
chr5 (35-108)||(42879482-42879555)
chr5 (257-321)||(7849976-7850039)
chr5 (28-81)||(5578745-5578796)
chr5 (28-77)||(20892404-20892453)
chr5 (260-320)||(13383003-13383062)
chr5 (260-320)||(38490702-38490761)
chr5 (257-320)||(41869418-41869480)
chr5 (153-239)||(18888795-18888881)
chr5 (36-81)||(13826364-13826409)
chr5 (28-81)||(16040323-16040376)
chr5 (257-305)||(14652120-14652168)
chr5 (260-320)||(43324108-43324167)
[»] chr6 (27 HSPs)
chr6 (157-320)||(20990100-20990263)
chr6 (160-320)||(34043181-34043344)
chr6 (28-108)||(1131660-1131740)
chr6 (28-108)||(1422842-1422922)
chr6 (153-320)||(21442393-21442564)
chr6 (153-320)||(1603013-1603183)
chr6 (28-80)||(13758914-13758966)
chr6 (260-320)||(22012515-22012575)
chr6 (28-108)||(34043431-34043511)
chr6 (28-81)||(18675267-18675320)
chr6 (28-81)||(20990351-20990404)
chr6 (28-108)||(1603257-1603337)
chr6 (29-81)||(22012252-22012304)
chr6 (260-319)||(18674997-18675056)
chr6 (153-241)||(1422679-1422768)
chr6 (260-320)||(1131416-1131476)
chr6 (260-320)||(14677386-14677445)
chr6 (179-314)||(26817014-26817148)
chr6 (262-317)||(34040410-34040465)
chr6 (260-322)||(31475160-31475221)
chr6 (28-77)||(26817276-26817325)
chr6 (260-320)||(15059811-15059871)
chr6 (260-320)||(33516981-33517040)
chr6 (153-239)||(22012405-22012492)
chr6 (28-74)||(26213000-26213046)
chr6 (28-81)||(15060081-15060134)
chr6 (153-205)||(18675114-18675166)
[»] chr2 (38 HSPs)
chr2 (153-284)||(7443842-7443974)
chr2 (255-322)||(2553700-2553767)
chr2 (153-320)||(19685439-19685609)
chr2 (157-234)||(27862099-27862177)
chr2 (260-320)||(33015594-33015654)
chr2 (255-322)||(41826357-41826424)
chr2 (28-108)||(41826101-41826181)
chr2 (260-320)||(44314442-44314502)
chr2 (260-320)||(44322621-44322681)
chr2 (28-81)||(6221300-6221353)
chr2 (35-108)||(22576128-22576201)
chr2 (28-108)||(2553943-2554023)
chr2 (28-108)||(33015330-33015410)
chr2 (29-81)||(44314179-44314231)
chr2 (29-81)||(44322358-44322410)
chr2 (256-307)||(40709898-40709949)
chr2 (28-81)||(19685707-19685760)
chr2 (160-321)||(22576281-22576443)
chr2 (260-320)||(2565275-2565334)
chr2 (28-78)||(11199422-11199472)
chr2 (160-234)||(11199582-11199655)
chr2 (260-322)||(45277868-45277929)
chr2 (260-320)||(90716-90775)
chr2 (260-320)||(18781564-18781623)
chr2 (260-321)||(7880715-7880775)
chr2 (260-316)||(6221032-6221088)
chr2 (260-316)||(14903684-14903740)
chr2 (260-320)||(18582945-18583004)
chr2 (260-323)||(19674454-19674516)
chr2 (153-239)||(44314332-44314419)
chr2 (153-239)||(44322511-44322598)
chr2 (28-81)||(14903938-14903991)
chr2 (261-322)||(33054397-33054457)
chr2 (157-232)||(2553790-2553866)
chr2 (257-305)||(9057070-9057118)
chr2 (28-56)||(27861957-27861985)
chr2 (260-320)||(38696798-38696857)
chr2 (157-232)||(41826258-41826334)
[»] chr7 (35 HSPs)
chr7 (153-317)||(20395078-20395243)
chr7 (153-321)||(8389590-8389761)
chr7 (28-108)||(20394922-20395002)
chr7 (157-321)||(18667011-18667177)
chr7 (153-320)||(4539512-4539681)
chr7 (28-108)||(4539753-4539833)
chr7 (28-108)||(8389436-8389516)
chr7 (260-320)||(13753759-13753819)
chr7 (28-108)||(35478114-35478194)
chr7 (157-323)||(35478272-35478439)
chr7 (28-81)||(18667282-18667335)
chr7 (28-81)||(31072661-31072714)
chr7 (28-108)||(13754002-13754082)
chr7 (260-320)||(43823964-43824024)
chr7 (260-322)||(31072929-31072990)
chr7 (153-234)||(43824057-43824139)
chr7 (28-81)||(8604730-8604783)
chr7 (260-320)||(8069234-8069293)
chr7 (260-320)||(48238116-48238175)
chr7 (260-320)||(48636360-48636419)
chr7 (273-320)||(12379303-12379349)
chr7 (260-322)||(19312329-19312390)
chr7 (275-320)||(45446446-45446491)
chr7 (254-322)||(10016124-10016191)
chr7 (260-320)||(15680109-15680168)
chr7 (153-234)||(31072817-31072899)
chr7 (257-303)||(35118634-35118680)
chr7 (260-321)||(135356-135416)
chr7 (28-81)||(5770791-5770844)
chr7 (260-305)||(6189785-6189830)
chr7 (28-81)||(8114049-8114102)
chr7 (28-77)||(15991840-15991889)
chr7 (35-76)||(43824168-43824209)
chr7 (271-320)||(44733170-44733219)
chr7 (161-232)||(44733259-44733331)
[»] chr4 (30 HSPs)
chr4 (153-325)||(39480544-39480719)
chr4 (160-320)||(10095322-10095485)
chr4 (260-320)||(14192705-14192764)
chr4 (260-322)||(28143837-28143898)
chr4 (28-81)||(10095159-10095212)
chr4 (28-81)||(13957165-13957218)
chr4 (153-234)||(36213467-36213548)
chr4 (36-81)||(39480396-39480441)
chr4 (260-321)||(49242562-49242622)
chr4 (28-81)||(52458930-52458983)
chr4 (28-81)||(52460187-52460240)
chr4 (260-320)||(6262020-6262079)
chr4 (260-320)||(51337307-51337366)
chr4 (31-81)||(7413883-7413933)
chr4 (31-81)||(7459964-7460014)
chr4 (35-77)||(36213651-36213693)
chr4 (260-320)||(7414128-7414188)
chr4 (260-320)||(7460209-7460269)
chr4 (260-320)||(14033716-14033775)
chr4 (260-304)||(29283372-29283416)
chr4 (260-320)||(38052595-38052654)
chr4 (35-78)||(6261725-6261768)
chr4 (273-320)||(36213396-36213443)
chr4 (260-318)||(17647962-17648019)
chr4 (28-78)||(23935914-23935964)
chr4 (257-291)||(41509588-41509622)
chr4 (28-78)||(51758369-51758419)
chr4 (254-320)||(56367266-56367331)
chr4 (45-78)||(6261771-6261804)
chr4 (28-81)||(10142057-10142110)
[»] chr3 (26 HSPs)
chr3 (153-320)||(19156736-19156906)
chr3 (153-321)||(27941806-27941977)
chr3 (28-108)||(25071530-25071610)
chr3 (28-108)||(53077104-53077184)
chr3 (254-321)||(10994515-10994582)
chr3 (153-306)||(15760516-15760672)
chr3 (28-108)||(19156980-19157060)
chr3 (260-320)||(25071278-25071338)
chr3 (29-81)||(27941653-27941705)
chr3 (28-108)||(52448030-52448110)
chr3 (260-320)||(6025147-6025206)
chr3 (28-108)||(10994286-10994366)
chr3 (28-108)||(15760746-15760826)
chr3 (157-320)||(52447788-52447951)
chr3 (260-320)||(53077370-53077430)
chr3 (260-323)||(23045263-23045325)
chr3 (260-322)||(31885336-31885397)
chr3 (260-320)||(22917793-22917852)
chr3 (28-72)||(24927987-24928031)
chr3 (28-81)||(1698333-1698386)
chr3 (273-322)||(36640721-36640769)
chr3 (260-322)||(30376915-30376976)
chr3 (260-305)||(10993473-10993518)
chr3 (260-320)||(1420194-1420253)
chr3 (260-320)||(1424344-1424403)
chr3 (153-240)||(53077258-53077346)
[»] scaffold0601 (1 HSPs)
scaffold0601 (260-320)||(6428-6488)
[»] scaffold0308 (1 HSPs)
scaffold0308 (260-320)||(12490-12550)
[»] scaffold0093 (2 HSPs)
scaffold0093 (260-320)||(50565-50625)
scaffold0093 (28-74)||(50849-50895)
[»] scaffold0295 (1 HSPs)
scaffold0295 (260-305)||(4627-4672)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 321 - 532
Target Start/End: Complemental strand, 38053172 - 38052961
Alignment:
Q  321 atggttgtttgcacaagtgtcaaggtaccatgaatttttgtggggttttaatcgtcacatccatgtgctagaagtactatttcaaacttttcatcatttt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053172 atggttgtttgcacaagtgtcaaggtaccatgaatttttgtggggttttaatcgtcacatccatgtgctagaagtactatttcaaacttttcatcatttt 38053073  T
Q  421 tccacatagttggttttcacttctactctattactaaaaaatctacattatgaagtgcagcgacctaacttcgtttaagtgtagcattgaatttgagatt 520  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053072 tccacatagttggttttcacttctactctattactgaaaaatctacattatgaagtgcagcgacctaacttcgtttaagtgtagcattgaatttgagatt 38052973  T
Q  521 taccatacctat 532  Q
    ||||||||||||    
T  38052972 taccatacctat 38052961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 5049266 - 5049096
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatatacatcccccatc--ttnnnnn 250  Q
    |||||| |||||| ||||||||||| |||||  || |||| || |||||||||||||| ||||||||| |||| |||||||| ||||   |  |          
T  5049266 attcctttatcatgtcaaagtttgggcctttgaagagaatttttctatatatacccccgaaatccaaatatttctatatacacccccgtaccgtaaaaaa 5049167  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  5049166 aaatttgggccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 5049096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 180 - 321
Target Start/End: Original strand, 23664435 - 23664577
Alignment:
Q  180 cttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnnnntttgggcccctaccggcaagggccc 278  Q
    |||||||| |||| ||| |||| ||| |||||||| |||||| |||| |||||||| || ||| |||        ||||||||||||||| |||||||||    
T  23664435 cttttcagagaattttgttatacatatcccccaaaatccaaatatttctatatacaccctccagcttaatttttttttgggcccctaccgacaagggccc 23664534  T
Q  279 taggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    ||||||||| |||||| ||| |||||||| |||||||||||||    
T  23664535 taggccgtcgcactcgtggcgtatgccctagggccggccctga 23664577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 321
Target Start/End: Complemental strand, 22070316 - 22070144
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| ||||| ||| |||| |  ||||||| ||||||| ||||||||| |||| |||||||| ||||  |||||         
T  22070316 attcctttatcatgtcaaagtttgggcctttgcagagaatttgtctatatacacccccctaaatccaaatatttctatatacacccccttatcttaattt 22070217  T
Q  251 nnntttggg--cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
       ||| ||  |||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  22070216 tttttttgggccccctaccggcatgggccctaggccgtcgcactcacggcctatgccctagggccggccctga 22070144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 5049422 - 5049342
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  5049422 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttataggagggtgtatataga 5049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 21906192 - 21906021
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| |||||  || |||| || ||||||||||||||| ||||||||| | ||||||||||| ||||  | |||         
T  21906192 attcctttatcatgtcaaagtttgggcctttgaagagaatttttctatatataccccccgaaatccaaataattttatatacacccccttaccttaaaaa 21906093  T
Q  251 nnntttggg--cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       ||| ||  |||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||    
T  21906092 actttttgggccccctaccggcatggaccctaggccgtcgcactcgcggcctatgccctagggccggccctg 21906021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 34307583 - 34307663
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  34307583 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttataggagggtgtatataga 34307663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 25095132 - 25095054
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatata 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||        |||||||||||||||||    
T  25095132 tatcaccaatttcttcgatgataaattttcgagcatattattaagatcaaccaattttttttataggagggtgtatata 25095054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 21906346 - 21906293
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21906346 tatcaccaatttcttcgataataaattttggagcatattatcaagaacaaccaa 21906293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 27431192 - 27431252
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||    
T  27431192 cccctaccggcatgggtcctaggccgtcacactcgcggcctatgccctagggccagccctg 27431252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 17967464 - 17967541
Alignment:
Q  31 caccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||        |||||||||||||||||||    
T  17967464 caccaatttcttcgataataaattttttagcatattatcaagaacaaccaattttttttataggagggtgtatataga 17967541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 22070470 - 22070417
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  22070470 tatcaccaatttcttcgataataaatttttgagtatattatcaagaacaaccaa 22070417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 27430928 - 27431007
Alignment:
Q  29 atcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||        |||||||||||||||||||    
T  27430928 atcaccaatttcttcgataataaacttttgagcatattatcaagaacaactaaatttttttataggagggtgtatataga 27431007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 48999220 - 48999050
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| |||||||||||  ||||  || |||  || |||||||||||||||||| |||||| |||| |||||||| ||||  | |||         
T  48999220 attcctttatcatgtcaaagtttgggtctttgaagagaacttttctatatataccccccaaaatccaaatatttctatatacacccccttaccttaaaaa 48999121  T
Q  251 nnntttgggcc-cctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       |||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||  ||||| |||||    
T  48999120 aaatttgggcctcctaccagcatgggccctaggccgtcgcactcgcggcctatgccctatggccgaccctg 48999050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 9023181 - 9023128
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  9023181 tatcatcaatttcttcgataataaatttttgcgcacattattaagaacaaccaa 9023128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 42721954 - 42721894
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  42721954 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctga 42721894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 48596489 - 48596538
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  48596489 tatcacaaatttcttcgataataaatttttgagcatattatcaagaacaa 48596538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 48999370 - 48999318
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  48999370 tatcaccaatttcttcgataataaatttt-tagcatattatcaagaacaaccaa 48999318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 26221400 - 26221341
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||||| || ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  26221400 cccctaccgacatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 26221341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 36296417 - 36296358
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  36296417 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 36296358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 48596636 - 48596806
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| ||||| ||| |||| || ||||||||| ||||  ||||||||| |||| |||||||| ||||  | |||         
T  48596636 attcctttatcatgtcaaagtttgggcctttgcagagaatttttctatatatatcccctgaaatccaaatatttctatatacacccccttaccttaaaat 48596735  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       ||||| |||| ||| |||| |||| |||||||||| |||||||| |||||||| | ||||||||||||    
T  48596736 ttttttggaccccctactggcatgggctctaggccgtcgcactcgcgacctatgccttagggccggccctg 48596806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 1347108 - 1347168
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1347108 cccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctga 1347168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 9022924 - 9022871
Alignment:
Q  254 tttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgccct 307  Q
    ||||| |||||||||||| |||||||||||| || ||||| |||||||||||||    
T  9022924 tttggccccctaccggcatgggccctaggccatcgcactcccggcctatgccct 9022871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 34307849 - 34307894
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcc 305  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||    
T  34307849 cccctaacggcatgggccctaggccgtcgcactcgcggcctatgcc 34307894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 44310421 - 44310372
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    |||||| |||||||| ||||||||||||| ||||| ||||||||||||||    
T  44310421 tatcactaatttcttagataataaatttttgagcacattattaagaacaa 44310372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 28946201 - 28946260
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||| ||||||||| |||||| |||||||| ||| ||||||||||||    
T  28946201 cccctaccggcatgggccttaggccgtcgcactcgtggcctatg-cctagggccggccctg 28946260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 34307737 - 34307816
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatat 231  Q
    |||||| |||||| |||||||||||||||||  || ||||  | ||||||||||||||| ||||||||| |||| |||||    
T  34307737 attcctttatcatgtcaaagtttggacctttgaagagaattcttctatatataccccccgaaatccaaatatttctatat 34307816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 12027754 - 12027701
Alignment:
Q  28 tatcaccaatttcttcgataataaa-ttttcgagcatattattaagaacaacca 80  Q
    |||||||||||| |||||||||||| ||||   |||||||||||||||||||||    
T  12027754 tatcaccaatttattcgataataaatttttttggcatattattaagaacaacca 12027701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 88; Significance: 5e-42; HSPs: 9)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 87927 - 88094
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||  |||||||||        ||    
T  87927 ctatatcatatcaaagtttgggccttttcagtgaattttgctatatataccccccaaaatccaaatatttttatatacactccccatcttaaattctttt 88026  T
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
     || |||||||||| ||||||||||||||||| ||||||||||||||||| | | |||||||||||||    
T  88027 gggccccctaccggaaagggccctaggccgtcgcactcgcggcctatgccttagtgccggccctgatg 88094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 88403 - 88570
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||        ||    
T  88403 ctatatcatatcaaagtttgggccttttcagtgaattttgctatatataccccccaaaatccaaatatttttatatacaccccccatcttaaattctttt 88502  T
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
     || |||||||||| ||||||||||||||||| |||||||||||||| || | | |||||||||||||    
T  88503 gggccccctaccggaaagggccctaggccgtcgcactcgcggcctataccttagtgccggccctgatg 88570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 88879 - 89046
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||        ||    
T  88879 ctatatcatatcaaagtttgggccttttcagtgaattttgctatatataccccccaaaatccaaatatttttatatacaccccccatcttaaattctttt 88978  T
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
     || |||||||||| ||||||||||||||||| |||||||||||||| || | | |||||||||||||    
T  88979 gggccccctaccggaaagggccctaggccgtcgcactcgcggcctataccttagtgccggccctgatg 89046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 157 - 321
Target Start/End: Original strand, 89354 - 89518
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacc-ccccaaatccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||| |||||||||||||  | |||||||        ||    
T  89354 ctatatcatatcaaagtttgggccttttcagtgaattttgctatatatacctcccaaaatccaaatatttttatataca--ctccatcttaaaaaaaatt 89451  T
Q  256 tggg-cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |||| ||||||||| |||||||||||||||||| |||||| |||||||||| | |||||||||||||    
T  89452 tgggccccctaccgacaagggccctaggccgtcgcactcggggcctatgccttagggccggccctga 89518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 87454 - 87620
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatata-ccccccaaatccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||        ||    
T  87454 ctatatcatatcaaagtttgggccttttcaatgaattttgctatatatatcccccaaaatccaaatatttttatatacaccccccatctt-aaattcttt 87552  T
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
    |||| ||||||||| |||||||||| |||||| |||||||  |||||||| | |||||||||||||||    
T  87553 tgggaccctaccggaaagggccctacgccgtcgcactcgcaccctatgccttagggccggccctgatg 87620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 87769 - 87849
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||    
T  87769 tatcacaaatttcttcgataataaattttcgggcatattattaagaacaaccaattttttttataggagggtgtatataga 87849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 89196 - 89276
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||    
T  89196 tatcacaaatttcttcgataataaattttcgagcatattattaagaacaatcaattttttttataggagggtgtatataga 89276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 88244 - 88293
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  88244 tatcacaaatttcttcgataataaattttcgagcatattattaagaacaa 88293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 88720 - 88769
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  88720 tatcacaaatttcttcgataataaattttcgagcatattattaagaacaa 88769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 4432362 - 4432531
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    ||||||||||||||||||||||||| |||||||| ||||  |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||          
T  4432362 attcctatatcatatcaaagtttgggccttttcaatgaactttgctatatataccccccaaaatccaaatatttttatatacaccccccatcttaaaagt 4432461  T
Q  252 nntttggg-cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
      |||||| |||| |||||||||| |||||||||||| || | |||||||||||||||||||||||||||    
T  4432462 tttttgggccccccaccggcaaggaccctaggccgtcgcaattgcggcctatgcccttgggccggccctg 4432531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 16729544 - 16729378
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccc-ccaaatccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    ||||||||||||| ||||||||||| ||||| |||  | | |||||||| ||||| | ||||||||||| |||| |||||||| || ||| |||          
T  16729544 attcctatatcatgtcaaagtttgggccttt-cagatagttttgctatacataccgctccaaatccaaatatttctatataca-cctccagcttaaattt 16729447  T
Q  252 nntttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
      |||||||||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||    
T  16729446 gttttgggcccctaccggcaagggccctaggccgtcgcactcgtgacctatgccctagggccggccctg 16729378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 319
Target Start/End: Complemental strand, 39906037 - 39905874
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||||||| ||||||||||  ||||||||| ||||||||||||||||||||||| ||||||||| |||| || ||||| |||||| |||         |    
T  39906037 ctatatcatgtcaaagtttgagccttttcagagaatgttgctatatataccccccaaaatccaaatatttctacataca-cccccaccttaaaaaaaaat 39905939  T
Q  256 tggg-cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccct 319  Q
    |||| |||||||||| ||||||| |||||||||  |||||||||||||||| | ||||| |||||    
T  39905938 tgggccccctaccggtaagggccgtaggccgtcgaactcgcggcctatgccgtagggccagccct 39905874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 7973280 - 7973442
Alignment:
Q  161 atcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnnnntttggg 259  Q
    ||||| ||||||||||  ||||||||| |||| ||||||||||||||||||||| |||||| |||| |||||||  ||  || |||        ||| ||    
T  7973280 atcatgtcaaagtttgagccttttcagagaattttgctatatataccccccaaaatccaaatatttctatataccccctacaccttaaaaaaacttttgg 7973379  T
Q  260 --cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
      |||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  7973380 gccccctaccggcatgggccctaggccgtcgcactcgtggcctatgccctagggccggccctg 7973442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 1981404 - 1981234
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| ||||| ||| ||||||| |||||||||  |||  ||||||||| |||| |||||||| ||||  | |||         
T  1981404 attcctttatcatgtcaaagtttgggcctttgcagagaatgtttctatatatattcccagaaatccaaatatttctatatacacccccttaccttaaaaa 1981305  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       |||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  1981304 aaatttgagccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 1981234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 3762399 - 3762338
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3762399 cccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctga 3762338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 16729697 - 16729644
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16729697 tatcaccaatttcttcgataataaattttcgagcatattattaaaaacaaccaa 16729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 45117197 - 45117137
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  45117197 cccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 45117137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 45117433 - 45117353
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  45117433 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatatttttataggagggtgtatataga 45117353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 7973125 - 7973198
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||    
T  7973125 aatttcttcgataataaatttttgagcatattattaagaacaaccaaaaaaaattataggagggtgtatataga 7973198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 31597489 - 31597436
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  31597489 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 31597436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 40971149 - 40971088
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  40971149 cccctaccagcaagggccctaggccatcgcactcgcggcctatgccctagggccggccctga 40971088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 4432208 - 4432288
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||        |||||||||||||||||||    
T  4432208 tatcatcaatttcttcgataataaatttccgagcatatttttaagaacaaccaaatttttttataggagggtgtatataga 4432288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 7263769 - 7263849
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||||||||||        |||||||||||||||||||    
T  7263769 tatcactaatttcttcgataataaattttcaaacatattattaagaacaaccaattttttttataggagggtgtatataga 7263849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 18327320 - 18327240
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||        |||||||||||||||||||    
T  18327320 tatcatcaatttcttcgataataaatttttgagcatattattaagaacaactaattttttttataggagggtgtatataga 18327240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 3762664 - 3762611
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  3762664 tatcaccaatttcttcgataataaatttttaagcatattatcaagaacaaccaa 3762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 39906193 - 39906140
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  39906193 tatcaccaatttctttgataatatattttcgaccatattattaagaacaaccaa 39906140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 7264031 - 7264091
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||| ||||||||||||| ||||| |||||| |||||||||||| ||||||||||||    
T  7264031 cccctaccagcaagggccctagaccgtcgcactcgtggcctatgccctagggccggccctg 7264091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 40971409 - 40971356
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  40971409 tatcactaatttcttcaataataaattttcaagcatattattaagaacagccaa 40971356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 6927924 - 6927983
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  6927924 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 6927983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 31597224 - 31597165
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  31597224 cccctaacggcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 31597165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 11995100 - 11995159
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| |||||||||||| || |||||| |||||||| ||| ||||||||||||    
T  11995100 cccctaccggcatgggccctaggccatcgcactcgtggcctatg-cctagggccggccctg 11995159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 11648889 - 11648942
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||  ||||||||||| |||  |||| ||||||||||||||||||    
T  11648889 tatcaccaattttatcgataataaaatttttagcacattattaagaacaaccaa 11648942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 18327119 - 18327038
Alignment:
Q  161 atcatatcaaagtttggaccttttcagtgaatgttgctatatatac-cccccaaatccaaacatttttatatacatccccca 241  Q
    ||||| ||||||||||| |||| |||| |||| |||||||||| || |||| ||||||||  |||| |||||||| ||||||    
T  18327119 atcatgtcaaagtttggtccttgtcagagaattttgctatatagacaccccaaaatccaactatttctatatacacccccca 18327038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 13490202 - 13490034
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    ||||||||||||||||||| ||||  |||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||          
T  13490202 attcctatatcatatcaaattttgagccttttcagtgaattttgctatatattccccccaaaatccaaatatttttatataca-cccccatcttaaaaaa 13490104  T
Q  252 nntttggg-cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       ||||| |||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  13490103 aaattgggccccctaccggcaagggccctaggccgtcgcactcgcggcctatggcttagggccggccctg 13490034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 158 - 320
Target Start/End: Original strand, 39537683 - 39537845
Alignment:
Q  158 tatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatatacatcccccatcttnnnnnnnntttg 257  Q
    |||||||| ||||||||||  ||||||||| |||| ||||||||||||||||| ||||||||| ||||||| ||||| |||||  |||        ||||    
T  39537683 tatatcatgtcaaagtttgcgccttttcagagaattttgctatatatacccccaaaatccaaatatttttacataca-ccccctccttaaaaaaaatttg 39537781  T
Q  258 gg-cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    || ||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||    
T  39537782 ggccccctaccggcaaaggccctaggccgtcgcacttgcggcctatgccctagggccggccctg 39537845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 42879408 - 42879239
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    |||||| |||||| ||||||||||| |||||||||  ||| ||||||||||||||||| ||| |||||| |||| |||||||| ||  || |||          
T  42879408 attcctttatcatctcaaagtttgggccttttcagataattttgctatatataccccctaaaatccaaatatttctatatacaccctacaccttaaaaaa 42879309  T
Q  252 nnttt-gggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
      ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  42879308 acttttgggcccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 42879239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 321
Target Start/End: Original strand, 5578896 - 5579067
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc--aaatccaaacatttttatatacatcccccatcttnnnnn 250  Q
    ||||||||||| ||||||||||||||||||||||  |||| ||| |||| ||||||| |  ||||| ||| |||| |||||||  || ||| |||         
T  5578896 attcctatatcttatcaaagtttggaccttttcaaagaattttgatatacatacccctccaaaatctaaatatttctatatacgccctccagcttaattt 5578995  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
       |||||||||| |||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||    
T  5578996 ttttttgggccccctaccggcaagggccctagcccgtcgcactcgtggcctatgccctagggccggccctga 5579067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 2676778 - 2676608
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| |||||  || |||| || ||||||||| ||||| ||||||||| |||| |||||||| ||||  | |||         
T  2676778 attcctttatcatgtcaaagtttgggcctttatagagaatttttctatatatatcccccgaaatccaaatatttctatatacacccccttaccttaaaga 2676679  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  2676678 ttttttgggccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 2676608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 13490357 - 13490304
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13490357 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 13490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 9409843 - 9410013
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    |||||| |||||| ||||||||| | |||||||||  ||| ||||||||||||||||||||| |||||| |||| |||||||  ||  || |||          
T  9409843 attcctttatcatgtcaaagtttaggccttttcagataattttgctatatataccccccaaaatccaaatatttctatataccccctacaccttaaaaaa 9409942  T
Q  252 nntttggg--cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
      ||| ||  ||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9409943 acttttggaccccctaccgacatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 9410013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 23962817 - 23962737
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  23962817 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttataggagggtgtatataga 23962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 39537526 - 39537606
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||        |||||||||||||||||||    
T  39537526 tatcaccaatttcttcgataatatattttcgagcatattattaagaacaatcaatgttttttataggagggtgtatataga 39537606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 18888771 - 18888705
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatggtt 326  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |||||    
T  18888771 cccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccatgctggtt 18888705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 2676932 - 2676852
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||        |||||||||||||||||||    
T  2676932 tatcaccaatttcttcgataataaatttttaagcatattatcaagaacaaccaaatttttttataggagggtgtatataga 2676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 18889035 - 18888955
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  18889035 tatcacaaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttataggagggtgtatataga 18888955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 9409696 - 9409769
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||        |||||||||||||||||||    
T  9409696 aatttcttcgataataaattttttagcatattattaagaacaaccaaaaaaaattataggagggtgtatataga 9409769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 13382737 - 13382790
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  13382737 tatcaccaatttcttagataataaatttttgagcatattatcaagaacaaccaa 13382790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 42879555 - 42879482
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||        |||||||||||||||||||    
T  42879555 aatttcttcgataataaatttttgagcatattattaagaacaatcaaaaaaagttataggagggtgtatataga 42879482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 7850039 - 7849976
Alignment:
Q  257 gggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  7850039 gggcccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctga 7849976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 5578745 - 5578796
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  5578745 tatcaccaatttctttgataataaattttcgagcatattatt--gaacaaccaa 5578796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 20892404 - 20892453
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  20892404 tatcaccaattacttcgataataattttttgagcatattattaagaacaa 20892453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 13383003 - 13383062
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  13383003 cccctaacggcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 13383062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 38490761 - 38490702
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  38490761 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 38490702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 41869480 - 41869418
Alignment:
Q  257 gggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||||||  ||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  41869480 gggcccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 41869418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 18888881 - 18888795
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatatacatcccc 239  Q
    |||||| |||||| ||||||||||| ||||| ||| |||  || ||||||| |||||| ||||||||| |||| |||||||| ||||    
T  18888881 attcctttatcatgtcaaagtttgggcctttgcagagaagttttctatatacaccccctaaatccaaatatttctatatacaccccc 18888795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 13826364 - 13826409
Alignment:
Q  36 atttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||    
T  13826364 atttcttcgatagtaaatttttgagcacattattaagaacaaccaa 13826409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 16040323 - 16040376
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||||    
T  16040323 tatcactaatttcttcaataacaaatttttgagcacattattaagaacaaccaa 16040376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 14652120 - 14652168
Alignment:
Q  257 gggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcc 305  Q
    ||||||||||||||| |||||||||||| || |||||| ||||||||||    
T  14652120 gggcccctaccggcatgggccctaggccatcgcactcgtggcctatgcc 14652168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 43324108 - 43324167
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||| |||| ||||||||||||||| ||| | ||||||||| ||| ||||||||||||    
T  43324108 cccctacgggcatgggccctaggccgtcgcacccccggcctatg-cctagggccggccctg 43324167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 20990263 - 20990100
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||| ||| |||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||| |||| |||| ||| |||| |  ||        ||    
T  20990263 ctataacatgtcaaagattgggccttttcagagaatgttactatatataccccctaaaatccaaatatttctataaaca-cccctacattaaaaaaaatt 20990165  T
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  20990164 tgggcccctaccggcaagggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 20990100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 320
Target Start/End: Complemental strand, 34043344 - 34043181
Alignment:
Q  160 tatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatataca-tcccccatcttnnnnnnnntttg 257  Q
    |||||| ||||||||||| ||||| ||| |||| || ||||||||| ||||| ||||||||| |||| |||||||| ||||  | |||        ||||    
T  34043344 tatcatgtcaaagtttgggcctttacagagaatttttctatatataacccccgaaatccaaatatttctatatacactcccttaccttaaaaaatttttg 34043245  T
Q  258 ggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34043244 ggccccctaccggcatgggccctaggccgtcacactcgcggcctatgccctagggccggccctg 34043181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1131740 - 1131660
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  1131740 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaattttttttataggagggtgtatataga 1131660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1422922 - 1422842
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  1422922 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaaaaaaatttataggagggtgtatataga 1422842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 21442564 - 21442393
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc--atcttnnnn 249  Q
    |||||| |||||| ||||||||||| ||||| ||| ||||||| ||||||||| ||||| ||||||||| |||| |||||||| | |||  |||||        
T  21442564 attcctttatcatgtcaaagtttgggcctttgcagagaatgtttctatatatatcccccgaaatccaaatatttctatatacacctcccttatcttaaaa 21442465  T
Q  250 nnnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
        |||||||||| |||||||| || |||||||||||| |||||||||||||||| || ||||||||||||    
T  21442464 aaaatttgggccccctaccggcatggaccctaggccgtcgcactcgcggcctatgctctagggccggccctg 21442393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 1603183 - 1603013
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| |||||  || |||| || ||||||||| ||||| ||||||||| |||| |||||||| ||||  | |||         
T  1603183 attcctttatcatgtcaaagtttgggcctttatagagaatttttctatatatatcccccgaaatccaaatatttctatatacacccccttaccttaaaga 1603084  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       ||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  1603083 ttttttggaccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 1603013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 13758914 - 13758966
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaacca 80  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13758914 tatcaccaatttcttcgataataaatttttgagcatattattaagaacaacca 13758966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 22012515 - 22012575
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  22012515 cccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 22012575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 34043511 - 34043431
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  34043511 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaaaaaatttataggagggtgtatataga 34043431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 18675320 - 18675267
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  18675320 tatcaccaatttcttcgacgataaattttcgagcatattattaagaacaaccaa 18675267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 20990404 - 20990351
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  20990404 tatcactaatttcttcgataataaattttcaagcatattattaagaacaaccaa 20990351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1603337 - 1603257
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||        |||||||||||||||||||    
T  1603337 tatcaccaatttcttcgataataaatttttaagcatattatcaagaacaaccaaatttttttataggagggtgtatataga 1603257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 22012252 - 22012304
Alignment:
Q  29 atcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  22012252 atcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 22012304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 18675056 - 18674997
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccct 319  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  18675056 cccctaccggcaagggccctaggccgtcgcacccgcggcctatgccttagggccggccct 18674997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 1422768 - 1422679
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatata-taccccccaaatccaaacatttttatatacatccccca 241  Q
    ||||||||||||| ||||||||||| ||||||||| |||| |||||||||| || |||| ||||||||| |||| || ||||| ||||||    
T  1422768 attcctatatcatgtcaaagtttgggccttttcagagaattttgctatatattatccccaaaatccaaatatttctaaatacacccccca 1422679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 1131476 - 1131416
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||||| ||||||||||||    
T  1131476 cccctaccggcaagggctctaggccgtcgcactcttggcctatgccctagggccggccctg 1131416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 14677445 - 14677386
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  14677445 cccctaccggcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 14677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 26817148 - 26817014
Alignment:
Q  179 ccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatatacatcccccatcttnnnnnnnntttgggcccctaccggcaagggccc 278  Q
    ||||| ||| |||| ||||||||| |||||||||||  |||| |||| |||||||| |||||| |||        |||| |||||||  |||||||||||    
T  26817148 cctttccagagaattttgctatatttaccccccaaaatcaaatatttctatataca-cccccaccttaaattttgtttgagcccctagaggcaagggccc 26817050  T
Q  279 taggccgtcacactcgcggcctatgcccttgggccg 314  Q
    | || |||| ||||| | ||||||||||||||||||    
T  26817049 ttggtcgtcgcactcccagcctatgcccttgggccg 26817014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 34040410 - 34040465
Alignment:
Q  262 cctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggcc 317  Q
    |||||||||| ||||||||||||||| |||||| || ||||||||| |||||||||    
T  34040410 cctaccggcatgggccctaggccgtcgcactcgtggtctatgccctagggccggcc 34040465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 31475160 - 31475221
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  31475160 cccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctgat 31475221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 26817325 - 26817276
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    ||||| ||||||||||||||||||||||| |||||  |||||||||||||    
T  26817325 tatcatcaatttcttcgataataaatttttgagcaccttattaagaacaa 26817276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 15059871 - 15059811
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||||| || ||||||||||||||  ||||| |||| |||||||| ||||||||||||    
T  15059871 cccctaccgacatgggccctaggccgttgcactcccggcatatgccctagggccggccctg 15059811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 33516981 - 33517040
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||  |||||| |||||||| ||| ||||||||||||    
T  33516981 cccctaccggcatgggccctaggccgttgcactcgtggcctatg-cctagggccggccctg 33517040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 22012405 - 22012492
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccc-caaatccaaacatttttatatacatcccc 239  Q
    |||||| |||||| ||||||||||| ||||| ||| |||  || ||||||||||||||  ||||||||| |||| |||||||| ||||    
T  22012405 attcctttatcatgtcaaagtttgggcctttgcagagaaaatttctatatataccccctgaaatccaaatatttctatatacaccccc 22012492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 26213000 - 26213046
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaa 74  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  26213000 tatcatcaatttcttcgataataaaattttgagcatattatcaagaa 26213046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 15060134 - 15060081
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||| ||||||  ||||||| || ||||| ||||||||||||||||||    
T  15060134 tatcaccaatgtcttcgtcaataaatatttgagcacattattaagaacaaccaa 15060081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 18675166 - 18675114
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatata 205  Q
    ||||||||||||| ||||| ||||| ||||||||| |||  ||||||||||||    
T  18675166 attcctatatcatgtcaaaatttgggccttttcagagaagtttgctatatata 18675114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 7443974 - 7443842
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccc-cccaaatccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| || ||||||||| ||||||||||||| ||||||||||          
T  7443974 attcctatatcatatcaaagtttgggccttttcggtgaattttgctatatatacccaccaaaatccaaatatttttatatacaccccccatcttaaaaaa 7443875  T
Q  252 nntttgggcccctaccggcaagggccctaggcc 284  Q
      || || |||||||||| ||||||||||||||    
T  7443874 aattgggccccctaccggaaagggccctaggcc 7443842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 2553767 - 2553700
Alignment:
Q  255 ttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  2553767 ttgggcccctaccggcaagggccctaggccgtcgcactcgtggcctatgccctagggccggccctgat 2553700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 19685609 - 19685439
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| |||||||||||| ||||  || |||  || |||||||||||||||||| |||||| |||| |||||||| ||||  | |||         
T  19685609 attcctttatcatgtcaaagtttggatctttgaagagaaattttctatatataccccccaaaatccaaatatttctatatacacccccttaccttaaaaa 19685510  T
Q  251 nnntttgggcc-cctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19685509 aaatttgggcctcctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 19685439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 27862099 - 27862177
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatataca 234  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||    
T  27862099 ctatatcatatcaaagtttgggccttttcagtgaattttactatatataccccccaaaatccaaatatttttatataca 27862177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 33015594 - 33015654
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33015594 cccctaccggcatgggccctaggccgtcacactcgcggcctatgccctagggccggccctg 33015654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 41826357 - 41826424
Alignment:
Q  255 ttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||    
T  41826357 ttgggcccctaccggcaagggccctaggccgtcgtactcgtggcctatgccctagggccggccctgat 41826424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 41826101 - 41826181
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||    
T  41826101 tatcactaatttcttcgataataaattttcaagcatattattaagaacaaccaattttttttataggagggtgtatataga 41826181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 44314442 - 44314502
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  44314442 cccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 44314502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 44322621 - 44322681
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  44322621 cccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 44322681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 6221353 - 6221300
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  6221353 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 6221300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 22576128 - 22576201
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||    
T  22576128 aatttcttcgataataaatttttgagcatattattaagaacaaccaaaaataattataggagggtgtatataga 22576201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 2554023 - 2553943
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||||||||||        |||||||||||||||||||    
T  2554023 tatcactaatttcttcgataataaattttcaagtatattattaagaacaaccaattttttttataggagggtgtatataga 2553943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 33015330 - 33015410
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||        |||||||||||||||||||    
T  33015330 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaagcaaatttttttataggagggtgtatataga 33015410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 44314179 - 44314231
Alignment:
Q  29 atcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  44314179 atcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 44314231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 44322358 - 44322410
Alignment:
Q  29 atcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  44322358 atcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 44322410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 40709898 - 40709949
Alignment:
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgccct 307  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  40709898 tgggcccctaccggcatgggccctaggccgtcgcactcgcggcctatgccct 40709949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 19685760 - 19685707
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  19685760 tatcaccaatttcttcgataataaattttttagcatattatcaagaacaaccaa 19685707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 321
Target Start/End: Original strand, 22576281 - 22576443
Alignment:
Q  160 tatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccc-caaatccaaacatttttatatacatcccccatcttnnnnnnnntttgg 258  Q
    |||||| ||||||||||| ||||| ||| |||| ||||||||| ||||||| |||||||||| |||| |||||||| ||||||  ||        ||| |    
T  22576281 tatcatgtcaaagtttgggccttt-cagagaattttgctatatgtacccccacaaatccaaatatttctatataca-cccccacattaaaaaaacttttg 22576378  T
Q  259 g--cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |  |||||||||||| ||||||||||||||| |||||  |||||||||||| |||| ||||||||    
T  22576379 ggccccctaccggcatgggccctaggccgtcgcactcatggcctatgccctagggctggccctga 22576443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 2565334 - 2565275
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  2565334 cccctaccggcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 2565275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 11199422 - 11199472
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaac 78  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  11199422 tatcactaatttcttcgataataaattttttagcatattattaagaacaac 11199472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 11199582 - 11199655
Alignment:
Q  160 tatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatataca 234  Q
    |||||| ||||||||||| ||||| ||| |||| ||||||||||||||||| ||||||||| |||| ||||||||    
T  11199582 tatcatgtcaaagtttgggccttt-cagagaattttgctatatatacccccaaaatccaaatatttctatataca 11199655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 45277868 - 45277929
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  45277868 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctgat 45277929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 90716 - 90775
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  90716 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 90775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 18781564 - 18781623
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  18781564 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 18781623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 7880715 - 7880775
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  7880715 cccctaacggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctga 7880775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 6221088 - 6221032
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggc 316  Q
    ||||||||||||  |||| ||||||||| |||||||||||||||| || ||||||||    
T  6221088 cccctaccggcataggccttaggccgtcgcactcgcggcctatgctctagggccggc 6221032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 14903740 - 14903684
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggc 316  Q
    |||||||||||||||||| ||||||||| ||| | ||||||||| ||| ||||||||    
T  14903740 cccctaccggcaagggccataggccgtcgcacccccggcctatggcctagggccggc 14903684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 18582945 - 18583004
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  18582945 cccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 18583004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 19674516 - 19674454
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
    |||||||||||| ||||||||||||||| |||| | | |||||| ||| |||||||||||||||    
T  19674516 cccctaccggcatgggccctaggccgtcgcacttgtgacctatg-cctagggccggccctgatg 19674454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 44314332 - 44314419
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccc-caaatccaaacatttttatatacatcccc 239  Q
    |||||| |||||| ||||||||||| ||||| ||| |||  || ||||||||||||||  ||||||||| |||| |||||||| ||||    
T  44314332 attcctttatcatgtcaaagtttgggcctttgcagagaaaatttctatatataccccctgaaatccaaatatttctatatacaccccc 44314419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 44322511 - 44322598
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccc-caaatccaaacatttttatatacatcccc 239  Q
    |||||| |||||| ||||||||||| ||||| ||| |||  || ||||||||||||||  ||||||||| |||| |||||||| ||||    
T  44322511 attcctttatcatgtcaaagtttgggcctttgcagagaaaatttctatatataccccctgaaatccaaatatttctatatacaccccc 44322598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 14903991 - 14903938
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| ||||||||||||||||| ||||   ||| ||||||||||||||||||    
T  14903991 tatcacaaatttcttcgataataatttttttggcacattattaagaacaaccaa 14903938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 33054457 - 33054397
Alignment:
Q  261 ccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    ||||| ||||||||||||||||||||| ||| | || |||||| ||| ||||||||||||||    
T  33054457 ccctatcggcaagggccctaggccgtcgcac-cccgacctatggcctagggccggccctgat 33054397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 2553866 - 2553790
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccc-caaatccaaacatttttatata 232  Q
    ||||| ||| |||||| |||| ||||||||| |||| || ||||||||||||||  ||||||||| |||| ||||||    
T  2553866 ctataacatgtcaaagattgggccttttcagagaattttactatatataccccctaaaatccaaatatttctatata 2553790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 9057118 - 9057070
Alignment:
Q  257 gggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcc 305  Q
    ||||||||||||||||||||  ||||||||| ||| | |||||||||||    
T  9057118 gggcccctaccggcaagggcagtaggccgtcgcacccccggcctatgcc 9057070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 27861957 - 27861985
Alignment:
Q  28 tatcaccaatttcttcgataataaatttt 56  Q
    |||||||||||||||||||||||||||||    
T  27861957 tatcaccaatttcttcgataataaatttt 27861985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 38696857 - 38696798
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||  ||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  38696857 cccctacgagcatgggccctaggccgtcgcactcgcagcctatg-cctagggccggccctg 38696798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 41826258 - 41826334
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccc-caaatccaaacatttttatata 232  Q
    ||||| ||| |||||| |||| ||||||||| |||| || ||||||||||||||  ||||||||| |||| ||||||    
T  41826258 ctataacatgtcaaagattgggccttttcagagaattttactatatataccccctaaaatccaaatatttctatata 41826334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 20395078 - 20395243
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatatacatcccccatcttnnnnnnn 252  Q
    ||||||||||||| ||||| |||||  |||||||| ||||||||||||| |||||||| ||||||||| |||| |||||||| || ||| |||           
T  20395078 attcctatatcatgtcaaaatttggggcttttcagagaatgttgctatacatacccccaaaatccaaatatttctatatacaccctccagcttaaatttt 20395177  T
Q  253 ntttgg-gcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggcc 317  Q
     |||||  |||||||||||||||| ||||||||||| |||||| |||||||||||| |||| ||||    
T  20395178 ttttggaccccctaccggcaagggacctaggccgtcgcactcgtggcctatgccctagggctggcc 20395243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 153 - 321
Target Start/End: Original strand, 8389590 - 8389761
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| ||||| ||| |||| || ||||| ||| ||||| ||||||||| |||| |||||||| ||||  | |||         
T  8389590 attcctttatcatgtcaaagtttgggcctttacagagaatttttctatacatatcccccgaaatccaaatatttctatatacacccccttaccttaaaga 8389689  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
       |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  8389690 ttttttgggccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctga 8389761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 20394922 - 20395002
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||    
T  20394922 tatcaccaatttcttcgataataaattttcgagcatattattaggaacaaccaattttttttataggagggtgtatataga 20395002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 321
Target Start/End: Complemental strand, 18667177 - 18667011
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnnnn-t 254  Q
    ||||| ||| |||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||| |||| |||| ||| |||| | |||         |    
T  18667177 ctataacatgtcaaagattgggccttttcagagaatgttactatatataccccctaaaatccaaatatttctataaaca-cccctaccttaaaaaaaaat 18667079  T
Q  255 ttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  18667078 ttgggccccctaccggcaagggccctaggccgtcgcactcgtggcctatgccctagggccggccctga 18667011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 4539681 - 4539512
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatatacatccccc-atcttnnnnnn 251  Q
    |||||| || ||| ||||||||||| ||||| ||| ||||  | ||||||| |||||| ||||||||| |||| |||||||| ||||  | |||          
T  4539681 attcctttagcatgtcaaagtttgggcctttgcagagaattattctatatacaccccctaaatccaaatatttctatatacacccccttaccttaaaaaa 4539582  T
Q  252 nntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
      |||||||||| | |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  4539581 aatttgggccccctcccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 4539512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 4539833 - 4539753
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  4539833 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttataggagggtgtatataga 4539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 8389436 - 8389516
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  8389436 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttataggagggtgtatataga 8389516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 13753819 - 13753759
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  13753819 cccctaccggcaagggccctaggctgtcgcactcgcggcctatgccctagggccggccctg 13753759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 35478114 - 35478194
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||    
T  35478114 tatcactaatttcttcgataataaattttcaagcatattattaagaacaaccaattttttttataggagggtgtatataga 35478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 35478272 - 35478439
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||| ||| |||||| ||||||||||| || |||| || |||||||||||||| ||| |||||| |||| |||| ||| ||| || |||        ||    
T  35478272 ctataacatgtcaaagattggacctttttagagaattttactatatataccccctaaaatccaaatatttctataaaca-ccctcagcttaaattttttt 35478370  T
Q  256 tgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
    |||||||| |||| ||||||| ||||| ||||| ||||||||||||||||||| |||| ||||||||||    
T  35478371 tgggccccctaccagcaagggtcctagtccgtcgcactcgcggcctatgccctagggctggccctgatg 35478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 18667335 - 18667282
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  18667335 tatcactaatttcttcgataataaattttcaagcatattattaagaataaccaa 18667282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 31072661 - 31072714
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  31072661 tatcacaaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 31072714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 13754082 - 13754002
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||    
T  13754082 tatcactattttctttgataataaattttcaagcatattattaagaacaaccaattttttttataggagggtgtatataga 13754002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 43824024 - 43823964
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||||| || |||||||||    
T  43824024 cccctaccggcatgggccctaggccgtcgcactcgtggcctatgccctaggaccggccctg 43823964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 31072929 - 31072990
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||||| | ||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  31072929 cccctaccgggatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctgat 31072990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 43824139 - 43824057
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatataca 234  Q
    |||||| |||||| ||||||||||| ||||||||| ||||  | ||||||||||||||| ||||||||| |||| ||||||||    
T  43824139 attcctttatcatgtcaaagtttgggccttttcagagaatacttctatatataccccccaaaatccaaatatttctatataca 43824057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 8604730 - 8604783
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  8604730 tatcaccaatttcttcgataataatttttctggcacattattaagaacaaccaa 8604783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 8069293 - 8069234
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  8069293 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 8069234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 48238175 - 48238116
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  48238175 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 48238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 48636419 - 48636360
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  48636419 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 48636360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 12379349 - 12379303
Alignment:
Q  273 gggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  12379349 gggccctaggccgtcgcactcgcggcctatg-ccttgggccggccctg 12379303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 19312329 - 19312390
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||||||| || |||||||||||| ||||| ||||||||| ||| ||||||||||||||    
T  19312329 cccctaccggcatggaccctaggccgtcgcactcacggcctatg-cctagggccggccctgat 19312390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 45446446 - 45446491
Alignment:
Q  275 gccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||    
T  45446446 gccctaggtcgtcacactcgcggcctatggcctagggccggccctg 45446491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 10016124 - 10016191
Alignment:
Q  254 tttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    ||||||||||||| |||| ||||||||||||||| |||   ||||||||| ||| ||||||||||||||    
T  10016124 tttgggcccctacgggcatgggccctaggccgtcgcacctccggcctatg-cctagggccggccctgat 10016191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 15680109 - 15680168
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  15680109 cccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 15680168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 31072817 - 31072899
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccc-cccaaatccaaacatttttatataca 234  Q
    |||||| |||||| |||| |||||| |||||  || ||||||| |||||||||||| || ||||||||| |||| ||||||||    
T  31072817 attcctttatcatgtcaatgtttgggcctttaaagagaatgtttctatatataccctccaaaatccaaatatttctatataca 31072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 35118634 - 35118680
Alignment:
Q  257 gggcccctaccggcaagggccctaggccgtcacactcgcggcctatg 303  Q
    ||||||||||| |||||||| ||||||| |||||||| |||||||||    
T  35118634 gggcccctaccagcaagggctctaggccatcacactcccggcctatg 35118680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 135416 - 135356
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    ||||||| |||| ||||||||||||||| ||||| || |||||| ||| |||||||||||||    
T  135416 cccctacaggcatgggccctaggccgtcgcactcccgacctatg-cctagggccggccctga 135356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 5770844 - 5770791
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||| ||||||||||||||||||||||||   ||| ||||||||||| ||||||    
T  5770844 tatcgccaatttcttcgataataaattttttggcacattattaagaaaaaccaa 5770791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 6189785 - 6189830
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcc 305  Q
    ||||||| |||| ||||||||||||||| |||||| ||||||||||    
T  6189785 cccctactggcatgggccctaggccgtcgcactcgtggcctatgcc 6189830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 8114049 - 8114102
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||| ||||||||||| ||||   ||| ||||||||||||||||||    
T  8114049 tatcaccaatttattcgataataatttttttggcacattattaagaacaaccaa 8114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 15991889 - 15991840
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    ||||||||||||||| ||||||||||||   |||||||||||| ||||||    
T  15991889 tatcaccaatttcttggataataaatttcttagcatattattaggaacaa 15991840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 43824209 - 43824168
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaaca 76  Q
    |||||||| ||||||||||||| || ||||||||||||||||    
T  43824209 aatttctttgataataaatttttgatcatattattaagaaca 43824168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 44733219 - 44733170
Alignment:
Q  271 aagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||| ||||||||| ||||| || |||||||||| ||||||||||||    
T  44733219 aagggccttaggccgtcgcactcccgacctatgccctagggccggccctg 44733170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 44733331 - 44733259
Alignment:
Q  161 atcatatcaaagtttgg-accttttcagtgaatgttgctatatataccccccaaatccaaacatttttatata 232  Q
    |||||||||| |||||| |||||||||| |||| ||| | |||||| |||| ||| ||||| |||||||||||    
T  44733331 atcatatcaatgtttgggaccttttcagagaattttgttctatatatccccaaaaaccaaatatttttatata 44733259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 153 - 325
Target Start/End: Original strand, 39480544 - 39480719
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnn 251  Q
    |||||| |||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||| |||| |||||||  ||  ||  ||          
T  39480544 attcctttatcatgtcaaagtttgggccttttcagagaattttgctatatataccccccaaaatccaaatatttctatataccccctacactttaaaaaa 39480643  T
Q  252 nntttggg--cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatggt 325  Q
      ||| ||  |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  39480644 acttttgggccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctgttggt 39480719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 320
Target Start/End: Original strand, 10095322 - 10095485
Alignment:
Q  160 tatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnnnnntttg 257  Q
    |||||| ||||||||||||||||| ||| ||||||| |||||||||  |||  ||||||||| |||| |||||||| || |  | |||        ||||    
T  10095322 tatcatgtcaaagtttggacctttgcagagaatgtttctatatatattcccagaaatccaaatatttctatatacaccctcttaccttaaaaaaaatttg 10095421  T
Q  258 gg-cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    || |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  10095422 ggtcccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 10095485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 14192705 - 14192764
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  14192705 cccctaccggcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 14192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 28143837 - 28143898
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  28143837 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctgat 28143898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 10095159 - 10095212
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  10095159 tatcaccaatttcttcgataatacatttttgagcatataatcaagaacaaccaa 10095212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 13957218 - 13957165
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  13957218 tatcactaatttcttcgataataatttttctagcacattattaagaacaaccaa 13957165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 36213548 - 36213467
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaatccaaacatttttatataca 234  Q
    |||||| |||||| ||||||||||| |||||||||  ||| || ||||||||||| || ||||||||| |||| ||||||||    
T  36213548 attcctttatcatgtcaaagtttgggccttttcagataattttactatatatacctccaaaatccaaatatttctatataca 36213467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 39480396 - 39480441
Alignment:
Q  36 atttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  39480396 atttctttgataataaatttttgagcatattattaagaacaaccaa 39480441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 49242622 - 49242562
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  49242622 cccctacgggcaagggccctaggccgtcgcactcccggcctatg-cctagggccggccctga 49242562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 52458983 - 52458930
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  52458983 tatcacaaatttcttcgatgataaatttttgagcacattattaagaacaaccaa 52458930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 52460240 - 52460187
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  52460240 tatcacaaatttcttcgatgataaatttttgagcacattattaagaacaaccaa 52460187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 6262020 - 6262079
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| || || ||||||||| ||||||||||||||||||| ||||||||||||    
T  6262020 cccctaccggcatgg-ccttaggccgtcgcactcgcggcctatgccctagggccggccctg 6262079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 51337366 - 51337307
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  51337366 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctg 51337307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7413883 - 7413933
Alignment:
Q  31 caccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||| ||||||||  |||||||||| ||||||||||||    
T  7413883 caccaatttcttcgatagtaaattttttagcatattatgaagaacaaccaa 7413933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7459964 - 7460014
Alignment:
Q  31 caccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||||||||||||||| ||||||||  |||||||||| ||||||||||||    
T  7459964 caccaatttcttcgatagtaaattttttagcatattatgaagaacaaccaa 7460014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 36213693 - 36213651
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaacaa 77  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  36213693 aatttcttcgataataaaattttgagcatattattaagaacaa 36213651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 7414128 - 7414188
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| |||| |||||||||| |||||| ||||||| |||| || |||||||||    
T  7414128 cccctaccggcatgggctctaggccgtcgcactcgtggcctatcccctaggaccggccctg 7414188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 7460209 - 7460269
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| |||| |||||||||| |||||| ||||||| |||| || |||||||||    
T  7460209 cccctaccggcatgggctctaggccgtcgcactcgtggcctatcccctaggaccggccctg 7460269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 14033716 - 14033775
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  14033716 cccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 14033775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 29283372 - 29283416
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgc 304  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||    
T  29283372 cccctaccggcaagggccctaggccgtcgcacccacggcctatgc 29283416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 38052654 - 38052595
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||| |||| || |||||||||||| ||||||||||||||| ||| ||||||||||||    
T  38052654 cccctacgggcatggcccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 38052595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 6261725 - 6261768
Alignment:
Q  35 aatttcttcgataataaattttcgagcatattattaagaacaac 78  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||    
T  6261725 aatttattcgatagtaaatttttgagcatattattaagaacaac 6261768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Complemental strand, 36213443 - 36213396
Alignment:
Q  273 gggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  36213443 gggccgtaggccgtcgcattcgcggcctatgccctagggccggccctg 36213396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 17647962 - 17648019
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccc 318  Q
    ||||||| |||||||||| ||||||||| ||||| ||||||||| ||| ||||||||||    
T  17647962 cccctacgggcaagggccgtaggccgtcgcactcccggcctatg-cctagggccggccc 17648019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 23935914 - 23935964
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaac 78  Q
    |||||||||||||||| |||||||||||| ||||| |||| ||||| ||||    
T  23935914 tatcaccaatttcttcaataataaattttagagcacattagtaagagcaac 23935964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 41509588 - 41509622
Alignment:
Q  257 gggcccctaccggcaagggccctaggccgtcacac 291  Q
    ||||||||||||||| |||||||||||||||||||    
T  41509588 gggcccctaccggcatgggccctaggccgtcacac 41509622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 51758419 - 51758369
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaac 78  Q
    |||||| ||||||||||||||||||||||   ||| |||||||||||||||    
T  51758419 tatcacaaatttcttcgataataaattttttggcacattattaagaacaac 51758369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 56367266 - 56367331
Alignment:
Q  254 tttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    ||||||||||||| |||| ||||||||||||||| |||   ||||||||| ||| ||||||||||||    
T  56367266 tttgggcccctacgggcatgggccctaggccgtcgcacctccggcctatg-cctagggccggccctg 56367331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 6261771 - 6261804
Alignment:
Q  45 ataataaattttcgagcatattattaagaacaac 78  Q
    |||||||||||| |||||||||||||||||||||    
T  6261771 ataataaatttttgagcatattattaagaacaac 6261804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 10142110 - 10142057
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    ||||| |||||||||||||||||| ||||   ||| ||||||||||||||||||    
T  10142110 tatcatcaatttcttcgataataatttttttggcacattattaagaacaaccaa 10142057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 19156906 - 19156736
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| ||||| ||| |||| || ||||||||| ||||| ||||||||| |||| |||||||| ||||  | |||         
T  19156906 attcctttatcatgtcaaagtttgggcctttacagagaatttttctatatatatcccccgaaatccaaatatttctatatacacccccttaccttaaaga 19156807  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
       |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19156806 ttttttgggccccctaccggcatgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 19156736  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 321
Target Start/End: Original strand, 27941806 - 27941977
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatccccc-atcttnnnnn 250  Q
    |||||| |||||| ||||||||||| ||||| ||| |||  || | ||||||||||||| ||||||||| |||| |||||||| ||||  | |||         
T  27941806 attcctttatcatgtcaaagtttgggcctttgcagagaaaatttcaatatataccccccgaaatccaaatatttctatatacacccccttaccttaaatt 27941905  T
Q  251 nnntttgggcccc-taccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
       |||||||||| |||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  27941906 ctttttgggccccctaccggcatgggccctaggccgtcgcactcgcggcttatgccctagggccggccctga 27941977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 25071610 - 25071530
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  25071610 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaattttttttataggagggtgtatataga 25071530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 53077104 - 53077184
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  53077104 tatcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttataggagggtgtatataga 53077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 10994515 - 10994582
Alignment:
Q  254 tttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctga 321  Q
    ||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  10994515 tttgggcccctgccggcatgggccctagaccgtcgcactcgcggcctatgccctagggccggccctga 10994582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 306
Target Start/End: Complemental strand, 15760672 - 15760516
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatatacccccc-aaatccaaacatttttatatacatcccc-catctt-nnnn 249  Q
    |||||| || ||| ||||||||||| ||||| ||| |||| || ||||| ||||||||| ||||||||| |||| |||||||| ||||  | |||         
T  15760672 attcctttaacatgtcaaagtttgggcctttgcagagaatatttctatacataccccccgaaatccaaatatttctatatacacccccttaccttaaaaa 15760573  T
Q  250 nnnntttgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgccc 306  Q
        |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  15760572 caattttgggcccctaccggcatgggccctaggccgtcgcactcgcggcctatgccc 15760516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 19157060 - 19156980
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||    
T  19157060 tatcatcaatttcttcgataataaatttttgagcatattatcaagaacaaccaaatttttttataggagggtgtatataga 19156980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 25071338 - 25071278
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  25071338 cccctaccggcttgggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 25071278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 27941653 - 27941705
Alignment:
Q  29 atcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  27941653 atcaccaatttcttcgataataaatttttgagcatattatcaagaacaaccaa 27941705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 52448110 - 52448030
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||| ||||        |||||||||||||||||||    
T  52448110 tatcactaatttcttcgataataaattttcaagcatattattaagaacatccaaaaaaaattataggagggtgtatataga 52448030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 6025147 - 6025206
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  6025147 cccctaccggcatgggccctaggccgtcgcactcgcggcctatg-cctagggccggccctg 6025206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 10994286 - 10994366
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||||||||||||||||||||||||| |||| |||||  ||||||||||||        |||||||||||||||||||    
T  10994286 tatcaccaatttcttcgataataaatttttgagcgtattaccaagaacaaccaaatttttttataggagggtgtatataga 10994366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 15760826 - 15760746
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaannnnnnnnataggagggtgtatataga 108  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||| |||||||        |||||||||||||||||||    
T  15760826 tatcacctatttcttcgataataaatttttgagcatattatcaagatcaaccaaatttttttataggagggtgtatataga 15760746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 52447951 - 52447788
Alignment:
Q  157 ctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccccccaaa-tccaaacatttttatatacatcccccatcttnnnnnnnntt 255  Q
    ||||| ||| |||||| |||| ||||||||| |||| || |||||||||||||| ||| |||||| |||| |||| ||| |||| | |||        ||    
T  52447951 ctataacatgtcaaagattgggccttttcagagaattttactatatataccccctaaaatccaaatatttctataaaca-cccctaccttaaaaaaattt 52447853  T
Q  256 tgggcccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
     || ||||||||||||||||| ||||| |||| |||| |||||||||||||| |||||| |||||    
T  52447852 gggccccctaccggcaagggctctaggtcgtcgcacttgcggcctatgccctagggccgtccctg 52447788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 53077370 - 53077430
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  53077370 cccctatcggcatgggccctaggccgtcgcactcgtggcctatgccctagggccggccctg 53077430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 23045263 - 23045325
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgatg 323  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| |||||||||||||||    
T  23045263 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctgatg 23045325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 31885336 - 31885397
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  31885336 cccctaccggcatgggccctaggccgtcgcactcgtggcctatg-cctagggccggccctgat 31885397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 22917852 - 22917793
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||  ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  22917852 cccctacgagcatgggccctaggccgtcacactcgcggcctatg-cctagggccggccctg 22917793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 24927987 - 24928031
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaag 72  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  24927987 tatcactaatttcttcgataataaattttcaagcatattattaag 24928031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 1698386 - 1698333
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaacaaccaa 81  Q
    |||||| |||||||||||||||||||| |  ||||||||||||| |||||||||    
T  1698386 tatcactaatttcttcgataataaattctttagcatattattaataacaaccaa 1698333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 36640769 - 36640721
Alignment:
Q  273 gggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  36640769 gggccctaggccgtcgcactcgcggcctatg-cctagggccggccctgat 36640721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 30376976 - 30376915
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctgat 322  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  30376976 cccctacgagcatgggccctaggccgtcgcactcgcggcctatg-cctagggtcggccctgat 30376915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 10993473 - 10993518
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcc 305  Q
    |||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  10993473 cccctaacggcatgggccttaggccgtcacactctcggcctatgcc 10993518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 1420194 - 1420253
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||  ||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  1420194 cccctacgagcatgggccctaggccgtcgcactcgcagcctatg-cctagggccggccctg 1420253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 1424403 - 1424344
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| ||||||||||||||| ||| | ||||||||  ||| ||||||||||||    
T  1424403 cccctaccggcatgggccctaggccgtcgcacccccggcctat-acctagggccggccctg 1424344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 53077258 - 53077346
Alignment:
Q  153 attcctatatcatatcaaagtttggaccttttcagtgaatgttgctatatataccc-cccaaatccaaacatttttatatacatccccc 240  Q
    |||||| |||||| ||| ||||||| |||||  || |||| || |||||||||||| || ||||||||| |||| |||||||| |||||    
T  53077258 attcctttatcatgtcagagtttgggcctttgaagagaatttttctatatataccctccgaaatccaaatatttctatatacacccccc 53077346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 6488 - 6428
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  6488 cccctaccggcaagggccctaggccgtcgcactcgcggcctatgccctagggccggccctg 6428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 12490 - 12550
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  12490 cccctaccggcatgggccctaggacgtcgcactcgcggcctatgccctagggccggccctg 12550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 50625 - 50565
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcccttgggccggccctg 320  Q
    |||||||||||| | ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  50625 cccctaccggcatgtgccctaggccgtcgcacttgcggcctatgccctagggccggccctg 50565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 50895 - 50849
Alignment:
Q  28 tatcaccaatttcttcgataataaattttcgagcatattattaagaa 74  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||    
T  50895 tatcaccaatttcttcaataataaatttttgagcatattatcaagaa 50849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 4672 - 4627
Alignment:
Q  260 cccctaccggcaagggccctaggccgtcacactcgcggcctatgcc 305  Q
    |||||||||| |||||||||||||| || |||||||||||||||||    
T  4672 cccctaccggtaagggccctaggccatcgcactcgcggcctatgcc 4627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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