View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_71 (Length: 299)
Name: NF1243_low_71
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 4531627 - 4531800
Alignment:
| Q |
84 |
ctttttaaagtgcttaatattgtagtttggttattcgtattttaaattttaatgagatttaactattttttaagttgaactcggtggcacccatgaagtt |
183 |
Q |
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| T |
4531627 |
ctttttaaagtgcttaatattgtagtttggttattcatattttaaattttaataagatttaacaattttttaagttgaactcggtggcacccatgaagtt |
4531726 |
T |
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| Q |
184 |
tgattgagtatgtac--------ccatcatttaatgatatgttatatttttgtattaatttagagtgaatacca |
249 |
Q |
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| T |
4531727 |
tgattgagtatgtactcatcattcaatcatttaatgatatgttatatttttgtattaatttagagtgaatacca |
4531800 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 31975958 - 31975991
Alignment:
| Q |
204 |
atttaatgatatgttatatttttgtattaattta |
237 |
Q |
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| T |
31975958 |
atttaatgacatgttatatttttgtattaattta |
31975991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 49594161 - 49594194
Alignment:
| Q |
204 |
atttaatgatatgttatatttttgtattaattta |
237 |
Q |
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| T |
49594161 |
atttaataatatgttatatttttgtattaattta |
49594194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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