View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_87 (Length: 275)
Name: NF1243_low_87
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 28920344 - 28920555
Alignment:
| Q |
19 |
aaacaaagggaaatagtgttgatgaagccactaagtgtaaacaataaacgtgatggttttcttctatttaactcaaatatagttaccatatattagagat |
118 |
Q |
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| T |
28920344 |
aaacaaagggaaatagtgttgatgaagccactaagtgtaagcaattaacatgatggttttcttctatttaactcaaatatagttaccatatattagagat |
28920443 |
T |
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| Q |
119 |
gtatatccatctaatatgaagtatgtccacttcaacatgagatgatttcagaactgagcagatgtcttctgaagcaaatccaatttatcacacgttgtat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
28920444 |
gtatatccatctaatatgaagtatgtccacttcaacatgagatgatttcagaactgagcagatgtcttcttaagcaaatctaatttatcacacgttgtat |
28920543 |
T |
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| Q |
219 |
gtaggatattgt |
230 |
Q |
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|||||||||||| |
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| T |
28920544 |
gtaggatattgt |
28920555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 28924216 - 28924005
Alignment:
| Q |
20 |
aacaaagggaaatagtgttgatgaagccactaagtgtaaacaataaacgtgatggttttcttctatttaactcaaatatagttaccatatattagagatg |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||| ||| |||| |||||||||| |
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| T |
28924216 |
aacaaagggaaaaagtgttgatgaagccactaagtgtaagcaataaacatgatggttttcttctgtttctctcaaatatatttaacatacattagagatg |
28924117 |
T |
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| Q |
120 |
tatatccatctaatatgaagtatgtccacttcaacatgagatgattt-cagaactgagcagatgtcttctgaagcaaatccaatttatcacacgttgtat |
218 |
Q |
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|||||| |||| ||||||||||||||| ||||||||| | ||||||| |||||| ||||||| |||||||||||||||| ||||||||| | |||| | |
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| T |
28924116 |
tatatctatctgatatgaagtatgtcctcttcaacattatatgatttccagaacagagcagacgtcttctgaagcaaatagaatttatcaagcattgtgt |
28924017 |
T |
|
| Q |
219 |
gtaggatattgt |
230 |
Q |
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|||||||||||| |
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| T |
28924016 |
gtaggatattgt |
28924005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 28921777 - 28921989
Alignment:
| Q |
20 |
aacaaagggaaatagtgttgatgaagccactaagtgtaaacaataaacgtgatggttttcttctatttaactcaaatatagttaccatatattagagatg |
119 |
Q |
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|||||| | ||| ||||||||| |||||||| ||||||| |||||||| | ||||||||||||| ||| ||||||| || ||| ||||||||||||||| |
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| T |
28921777 |
aacaaatgtaaagagtgttgataaagccacttagtgtaagcaataaacattatggttttcttctgtttctctcaaatttatttagcatatattagagatg |
28921876 |
T |
|
| Q |
120 |
tatatccatctaatatgaagtatgtccacttcaacatgagatgattt-cagaactgagcagatgtcttctgaagcaaatccaatttatcacacgttgtat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||| ||||| ||||||||||||||||||| |
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| T |
28921877 |
tatatccatctaatatgaagtatgtccacttcaacatgagatgatttccagaacagagcagacacattctaaagtaaatctaatttatcacacgttgtat |
28921976 |
T |
|
| Q |
219 |
gtaggatattgtt |
231 |
Q |
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|||||||||||| |
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| T |
28921977 |
ttaggatattgtt |
28921989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 31137505 - 31137607
Alignment:
| Q |
107 |
tatattagagatgtatatccatctaatatgaagtatgtccacttcaacatgaga-tgatttcagaactgagcagatgtcttctgaagcaaatccaattta |
205 |
Q |
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||||||||| |||||||| | ||||||||||||||||| |||||||||| |||| || ||| ||| |||| |||||||||| |||||||||| |||| | |
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| T |
31137505 |
tatattagatatgtatatgcctctaatatgaagtatgttcacttcaacaggagattgtttttagagatgagaagatgtcttccgaagcaaatctaattaa |
31137604 |
T |
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| Q |
206 |
tca |
208 |
Q |
| |
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||| |
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| T |
31137605 |
tca |
31137607 |
T |
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