View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_9 (Length: 513)
Name: NF1243_low_9
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_9 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 29 - 501
Target Start/End: Complemental strand, 31085864 - 31085395
Alignment:
| Q |
29 |
acacataagcgatgttgctgcattatttcttctctttccctttcttgagccttttacaatgctttcatttttagctactaacctacattgacataatact |
128 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31085864 |
acacataagtgatgttgctgcattatttcttctctttcgctttcttgagccctttaccatgctttcatgtttagctactaacctacattgacataatact |
31085765 |
T |
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| Q |
129 |
catgcaaggatcagtacttcatatcttatgagctacaatattgcatttgttccatctagatattaattaaaggcttaattctcatnnnnnnnnnnnnnct |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
31085764 |
catgcaaggatcagtacttcatatcttatgagctacaatattgcatttgttccatctagatattaattaaaggattaattctcataaaaaaaaatt---t |
31085668 |
T |
|
| Q |
229 |
attcaaaacaattaaaggattaattatccatttgcaattacgagcaggacatgatattggccgccacttttctcagcgacatcccctcatttgtggcaag |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31085667 |
attcaaaacaattaaaggattaattatccatttgcaattacgagcaggacatgatattggccgccacttttctcagcgacatcccctcatttgtggcaag |
31085568 |
T |
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| Q |
329 |
atttgcatcagtttctttcttggtaaattattcctcattctcctcctcaaatatttgtgaagtctctaaccaatctaaaatatggaggatggaaaattca |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
31085567 |
atttgcatcagtttctttcttggtaaattattcctcattctcctccttaaatatttgtaaagtctctaaccaatccaaaatatggaggatggaaaattca |
31085468 |
T |
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| Q |
429 |
gctgctgaatgagttattctttgcctttgaagtcaacaaattatgcaaattccgatccttccatcgcaacagc |
501 |
Q |
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| T |
31085467 |
gctgctgaatgagttattctttgcatttgaagtcaacaaattatgcaaattccgatccttccatcgcaacagc |
31085395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 31056395 - 31056367
Alignment:
| Q |
91 |
tttcatttttagctactaacctacattga |
119 |
Q |
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| T |
31056395 |
tttcatttttagctactaacctacattga |
31056367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 6407 - 6484
Alignment:
| Q |
78 |
ccttttacaatgctttcatttttagctactaacctacattgacataatactcatgcaaggatcagtacttcatatctt |
155 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| ||| || || || ||||||| || ||||||| |||||| |
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| T |
6407 |
ccttttaccatgttttcatttttagctactaacctacaatgaaatgattctgatgcaagcattggtacttcttatctt |
6484 |
T |
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