View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_90 (Length: 273)

Name: NF1243_low_90
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_90
NF1243_low_90
[»] chr1 (3 HSPs)
chr1 (13-245)||(46445892-46446124)
chr1 (60-199)||(46672089-46672228)
chr1 (126-244)||(5054162-5054277)
[»] chr8 (3 HSPs)
chr8 (118-219)||(9841987-9842088)
chr8 (131-215)||(9860641-9860725)
chr8 (118-199)||(27360975-27361056)
[»] chr5 (6 HSPs)
chr5 (122-212)||(2326337-2326427)
chr5 (119-199)||(39576365-39576445)
chr5 (119-206)||(39572359-39572446)
chr5 (68-189)||(4100463-4100584)
chr5 (57-189)||(4146452-4146584)
chr5 (154-198)||(225390-225434)
[»] chr3 (1 HSPs)
chr3 (119-189)||(7256838-7256908)
[»] scaffold0658 (1 HSPs)
scaffold0658 (118-199)||(2841-2922)
[»] chr6 (1 HSPs)
chr6 (117-197)||(112631-112711)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 46445892 - 46446124
Alignment:
Q  13 aatatccacttcccaatgtgccaatgcccggtgatcgagttccaatatttttatcgatgggagatcatctttcttgcattgcatacaaagatgaaattta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46445892 aatatccacttcccaatgtgccaatgcccggtgatcgagttccaatatttttatcgatgggagatcatctttcttgcattgcatataaagatgaaattta 46445991  T
Q  113 tgaagcatatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46445992 tgaagcatatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgag 46446091  T
Q  213 cttaataatttgtcttcagtggtatttcgtttt 245  Q
    ||||||||||||||||| |||||||||||||||    
T  46446092 cttaataatttgtcttcggtggtatttcgtttt 46446124  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 46672228 - 46672089
Alignment:
Q  60 tttttatcgatgggagatcatctttcttgcattgcatacaaagatgaaatttatgaagcatatcaaatctacattttggattttgattcgggggaatggt 159  Q
    ||||||| ||||||| |||| |||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||    
T  46672228 tttttattgatgggaaatcacctttcttgcattgtgtacaaagataaaattaatgaagcatatcaaatctacattttggattttgattcaggaaaatggt 46672129  T
Q  160 ctctttatcatgagatgggacattttgattatgtggctgc 199  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  46672128 ctctctatcatgcgatgggacattttgattatgtggctgc 46672089  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 5054277 - 5054162
Alignment:
Q  126 atctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgagcttaataatttgt 225  Q
    ||||| ||||||||||||||| ||||  ||||||||| ||||||||||||||||| |||||||||||| ||||| || |||||||||||| ||| |||||    
T  5054277 atctatattttggattttgatacgggaaaatggtctcattatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatactttgt 5054178  T
Q  226 cttcagtggtatttcgttt 244  Q
     |   ||||||||||||||    
T  5054177 at---gtggtatttcgttt 5054162  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 9841987 - 9842088
Alignment:
Q  118 catatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgagcttaa 217  Q
    ||||||||||||||||| ||||||||||||| ||  ||||||||||| ||||||||||||||| ||||||||||||| |||| |||||||||  ||||||    
T  9841987 catatcaaatctacattctggattttgattcaggaaaatggtctcttcatcatgagatgggaccttttgattatgtgtctgcttgtggtcataggcttaa 9842086  T
Q  218 ta 219  Q
    ||    
T  9842087 ta 9842088  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 9860641 - 9860725
Alignment:
Q  131 cattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgagctt 215  Q
    ||||||||||  |||||| ||  ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| ||||||    
T  9860641 cattttggatcatgattcaggaaaatggtctctttatcatgagatgggaccttttgattatgtgtctgcttgtggtcaagagctt 9860725  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 27360975 - 27361056
Alignment:
Q  118 catatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgc 199  Q
    ||||||||||||| | ||||||||||||||  ||  |||||  |||||||||||||||||||| ||||||||| | ||||||    
T  27360975 catatcaaatctatactttggattttgatttaggaaaatggaatctttatcatgagatgggaccttttgattacgaggctgc 27361056  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 2326427 - 2326337
Alignment:
Q  122 tcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggtcatgag 212  Q
    |||||||||||||||| |||||||||| ||  ||| |||||||||||||||||||||||  ||||||||||||||| | ||||||||||||    
T  2326427 tcaaatctacattttgaattttgattcaggaaaattgtctctttatcatgagatgggaccatttgattatgtggctacttgtggtcatgag 2326337  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 39576365 - 39576445
Alignment:
Q  119 atatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgc 199  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |||  ||||||| |||||    
T  39576365 atatcaaatctacactttggattttgattcaggagaatggtctctttatcatgagatgggacctttcaattatgttgctgc 39576445  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 39572359 - 39572446
Alignment:
Q  119 atatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgcctgtggt 206  Q
    ||||| ||||||||||||||||||||||||  |  ||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||    
T  39572359 atatccaatctacattttggattttgattcaagaaaatggtctccttatcatgagatgggaccttttgattatgttgctgcttgtggt 39572446  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 4100584 - 4100463
Alignment:
Q  68 gatgggagatcatctttcttgcattgcatacaaagatgaaatttatgaagcatatcaaatctacattttggattttgattcgggggaatggtctctttat 167  Q
    ||||||| |||||||||||||||| |   | || |||| | |||||  | ||| |||||||||||||||||||||||| |  ||  ||||||||||||||    
T  4100584 gatgggaaatcatctttcttgcatagtgaataatgatgcattttatagaacatttcaaatctacattttggattttgagttaggaaaatggtctctttat 4100485  T
Q  168 catgagatgggacattttgatt 189  Q
    ||||||||||||| ||||||||    
T  4100484 catgagatgggaccttttgatt 4100463  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 4146452 - 4146584
Alignment:
Q  57 atatttttatcgatgggagatcatctttcttgcattgcatacaaagatgaaatttatgaagcatatcaaatctacattttggattttgattcgggggaat 156  Q
    |||||||||  ||||||| |||| |||||||||||||   | || |||| | ||| |  | ||| |||||||||  ||||||||||||| |  ||  |||    
T  4146452 atatttttagggatgggaaatcacctttcttgcattgtgaataatgatgcattttgtagaacatttcaaatctatgttttggattttgagttaggaaaat 4146551  T
Q  157 ggtctctttatcatgagatgggacattttgatt 189  Q
    |||||||||||||||||||||||| ||||||||    
T  4146552 ggtctctttatcatgagatgggaccttttgatt 4146584  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 225390 - 225434
Alignment:
Q  154 aatggtctctttatcatgagatgggacattttgattatgtggctg 198  Q
    ||||||||||||||||||||||  ||| ||||| |||||||||||    
T  225390 aatggtctctttatcatgagatctgaccttttggttatgtggctg 225434  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 7256838 - 7256908
Alignment:
Q  119 atatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgatt 189  Q
    |||||||||||||||||| |||||||||||  |  |||||||||||||||||  |||||||| ||||||||    
T  7256838 atatcaaatctacattttagattttgattcaagaaaatggtctctttatcatatgatgggaccttttgatt 7256908  T

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Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 2922 - 2841
Alignment:
Q  118 catatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggctgc 199  Q
    ||||||||||||| | ||||||||||||||  ||  |||||  |||||||||||||||||||| ||||||||| | ||||||    
T  2922 catatcaaatctatactttggattttgatttaggaaaatggaatctttatcatgagatgggaccttttgattacgaggctgc 2841  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 112711 - 112631
Alignment:
Q  117 gcatatcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggacattttgattatgtggct 197  Q
    ||||||||||||||   ||||||||| ||||  ||  ||||| ||||||||||||||||||| | ||||||||||| ||||    
T  112711 gcatatcaaatctatgctttggatttggatttaggaaaatggactctttatcatgagatggggccttttgattatggggct 112631  T

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