View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12440_high_5 (Length: 335)
Name: NF12440_high_5
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 4620610 - 4620910
Alignment:
| Q |
9 |
cagaacctgtgctttttctagtatgttatgttaagaaaacataaacgaatatcactatatctatctggattcagaataacaacggttataaataagacaa |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4620610 |
cagaaactgtgctttttctagtatgttatgttaagaaaacataaacgaatatcactatatctatctggattcagaataacaacggttataaataagacac |
4620709 |
T |
|
| Q |
109 |
gtat------tattattaacataatcgaaaagaaagagcagaaaacaaagaaacaaaacaatatctaacgatcatatacatacaatcgcttacgagtcgg |
202 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4620710 |
ataagccaagtattattaacataatcgaaaagaaagagcagaaaacaaagaaacaaaacaatatctaacgatcatatacatacaatcgcttacgagtcgg |
4620809 |
T |
|
| Q |
203 |
gacgatacgaaattgaagaaaaagaaagcttgccctggaaggaagagaaatattgtagagaggagcagattggttccatatatatatatatattctcacc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4620810 |
gacgatacgaaattgaagaaaaagaaagcttgccctggaaggaagagaaagattgtagagaggagcagattggttccatatatatatatatattctcacc |
4620909 |
T |
|
| Q |
303 |
g |
303 |
Q |
| |
|
| |
|
|
| T |
4620910 |
g |
4620910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University