View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12440_high_7 (Length: 245)
Name: NF12440_high_7
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 44725217 - 44725445
Alignment:
| Q |
1 |
gaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaagagaacgagaggctaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44725217 |
gaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaagagaacgagaggctaatg |
44725316 |
T |
|
| Q |
101 |
gatctctaatgcactgaaggaaagattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaagcaaaggaatcattgtt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44725317 |
gatctctaatgcactgaaggaaatattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaagcaaagggatcattgtt |
44725416 |
T |
|
| Q |
201 |
acaaagttgttacaagtcaaccatacaag |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44725417 |
acaaagttgttacaagtcaaccatacaag |
44725445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University