View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12440_high_8 (Length: 244)
Name: NF12440_high_8
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41650415 - 41650650
Alignment:
| Q |
1 |
ttttacccagtcctacagtttcagcttcgaacaaaaaaccgaagacatcacattgagtaccaccctctcttgttttatacgtgatgtgagcattaacaaa |
100 |
Q |
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| T |
41650415 |
ttttacccagtcctaccgtttcagcttcgaacaaaaaaccgaagacatcacattcagtaccaccctctcttgttttatacgtgatgtgagcattaacaaa |
41650514 |
T |
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| Q |
101 |
actgtaagtatctttgtattcatgctgcagttgtaggagatggttttaataaccagtggctaaaaggcgactagttccattttacttcaattgtttactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
41650515 |
actgtaagtatctttgtattcatgctgcagttgtaggaggtggttttaataaccagtggctaaaaggcgactagttccatcttacttcaattatttactc |
41650614 |
T |
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| Q |
201 |
aagtattacaaagaaaagtaaattattgatgtccat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41650615 |
aagtattacaaagaaaagtaaattattgatgtccat |
41650650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22877610 - 22877848
Alignment:
| Q |
1 |
ttttacccagtcctacagtttcagcttcgaacaaaaaaccgaagacatcacattgagtaccaccctctcttgttttat---acgtgatgtgagcattaac |
97 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
22877610 |
ttttacccagtccaaccgtttcagcttcccgcaaaaaaccgaagacatcacattcggtactaccctctcttgttttatgtgatgtgatgtgagcattaac |
22877709 |
T |
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| Q |
98 |
aaaactgtaagtatctttgtattcatgctgcagttgtaggagatggttttaataaccagtggctaaaaggcgactagttccattttacttcaattgttta |
197 |
Q |
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| T |
22877710 |
agtactgttagtatctttgtactcatactgcaattgtaggagatggttttaatagccagtggctaaaagtcgactaattccattctacttaaattattta |
22877809 |
T |
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| Q |
198 |
ctcaagtattacaaagaaaagtaaattattgatgtccat |
236 |
Q |
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||||| ||| |||||||||||||| |||||||||||||| |
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| T |
22877810 |
ctcaactatcacaaagaaaagtaatttattgatgtccat |
22877848 |
T |
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