View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12440_low_1 (Length: 1062)
Name: NF12440_low_1
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 981; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 981; E-Value: 0
Query Start/End: Original strand, 10 - 1043
Target Start/End: Complemental strand, 28817841 - 28816808
Alignment:
| Q |
10 |
aacctgtgttgcgttgtgtggcacccttgcagggcaactcttctttggctggcttggtgacaaacttggtagnnnnnnngtttatggcataactcttact |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28817841 |
aaccggtgttgcgttgtgtggcacccttgcagggcaactcttctttggctggcttggtgacaaacttggtagaaaaaaagtttatggcataactcttact |
28817742 |
T |
|
| Q |
110 |
accatggttggttttgctttattatcaggtctttcctttggttccacgccgaaaaccgtggtaactagtctttgtttcttcagattctggctaggattcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817741 |
accatggttggttttgctttattatcaggtctttcctttggttccacgccgaaaaccgtggtaactagtctttgtttcttcagattctggctaggattcg |
28817642 |
T |
|
| Q |
210 |
gcatcggtggagactatcctctatcagctgtgatcatgtctgaatatgctaatcagaaaacacgaggaagttttattgctgctgttttcgctatgcaagg |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817641 |
gcattggtggagactatcctctatcagctgtgatcatgtctgaatatgctaatcagaaaacacgaggaagttttattgctgctgttttcgctatgcaagg |
28817542 |
T |
|
| Q |
310 |
agttggaatattggttgctggaggcgtagccatgtttgtctcgaaactattcttattgtactttccagctcctgattttgaaactgatgctgttctatct |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817541 |
agttggaatattggttgctggaggcgtagccatgtttgtctcgaaactattcttattgtactttccagctcctgattttgaaactgatgctgttctatcc |
28817442 |
T |
|
| Q |
410 |
actcaaccagaaggtgatttcgtttggagaattgtgttaatgtttggtgctgttcctgcagcattaacttactattggagaatgaaaatgccggaaactg |
509 |
Q |
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| T |
28817441 |
actcaaccagaaggtgatttcgtttggagaattgtgttaatgtttggtgctgttcctgcagcattaacttactattggagaatgaaaatgccggaaactg |
28817342 |
T |
|
| Q |
510 |
cgagatacactgctttggttgaaggagatcacaagaaagccgttgaagatatggcaaaagttcttgataggaacatactttcagaagaatctaataccag |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817341 |
cgagatacactgctttggttgaaggagatcacaagaaagccgttgaagatatggcaaaagttcttgataggaacatactttcagaagaatctaataccag |
28817242 |
T |
|
| Q |
610 |
gattgctatcaggccactcgagtcacactcttatggactcttatcttcagagtttcttaataggcatggccttcatcttctaggaacaactagtacatgg |
709 |
Q |
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| T |
28817241 |
gattgctatcaggccactcgagtcacactcttatggactcttctcttcagagtttcttaataggcatggccttcatcttctaggaacaactagtacatgg |
28817142 |
T |
|
| Q |
710 |
tttttattggacattgctttctatagtcttcaactgacacaaaaagatatttatccagctagtggacttgtatacaaggcttccaaaatgaatgccatag |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817141 |
tttttattggacattgctttctatagtcttcaactgacacaaaaagatatttatccaactagtggacttgtatacaaggcttccaaaatgaatgccatag |
28817042 |
T |
|
| Q |
810 |
aggaagtgtttcagctctcacgagcgatgtttgcggttgccttggtcgccacggtaccgggatactggtgcacagttttcctaattgaaaagatcggacg |
909 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817041 |
aggaagtgtttcagctctcacgagcgatgtttgcggttgccttgatcgccacggtaccgggatactggtgcacagttttcctaattgaaaagatcggacg |
28816942 |
T |
|
| Q |
910 |
attcagaatccagctcgttggattccttgttatgtctgtttgtatgtggtttctaggacacaattatagatcattcaggggagaagaatctgcatgcaag |
1009 |
Q |
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| T |
28816941 |
attcagaatccagctcattggattccttgttatgtctgtttgtatgtggtttctaggacacaattatagatcattcaggggagaagaatctgcatgcaag |
28816842 |
T |
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| Q |
1010 |
aatggttcaaaatatggtttttgtaatggaaacc |
1043 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
28816841 |
aatggttcaaaatatagtttttgtaatggaaacc |
28816808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 415 - 501
Target Start/End: Complemental strand, 37315675 - 37315589
Alignment:
| Q |
415 |
accagaaggtgatttcgtttggagaattgtgttaatgtttggtgctgttcctgcagcattaacttactattggagaatgaaaatgcc |
501 |
Q |
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|||||||| ||||| ||||||||||| | | |||||||||||||||||||| | ||||||||||||||| | ||||||||||| |
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| T |
37315675 |
accagaagctgattatgtttggagaatcattctcatgtttggtgctgttcctgctggtttaacttactattggcgtatgaaaatgcc |
37315589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 737
Target Start/End: Original strand, 16184687 - 16184724
Alignment:
| Q |
700 |
tagtacatggtttttattggacattgctttctatagtc |
737 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||| |
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| T |
16184687 |
tagtacatggtttttgttggatattgctttctatagtc |
16184724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 737
Target Start/End: Original strand, 16224077 - 16224114
Alignment:
| Q |
700 |
tagtacatggtttttattggacattgctttctatagtc |
737 |
Q |
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||||||||||||||| ||||| |||||||||||||||| |
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| T |
16224077 |
tagtacatggtttttgttggatattgctttctatagtc |
16224114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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