View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12440_low_10 (Length: 283)

Name: NF12440_low_10
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12440_low_10
NF12440_low_10
[»] chr6 (9 HSPs)
chr6 (1-274)||(27513019-27513292)
chr6 (1-274)||(9140342-9140615)
chr6 (1-274)||(16821939-16822212)
chr6 (1-186)||(2410847-2411032)
chr6 (1-135)||(2411606-2411740)
chr6 (2-135)||(20055052-20055185)
chr6 (1-135)||(620081-620215)
chr6 (1-135)||(24147624-24147758)
chr6 (1-135)||(20044809-20044943)
[»] chr4 (6 HSPs)
chr4 (1-274)||(18039333-18039606)
chr4 (1-134)||(15899683-15899816)
chr4 (1-135)||(14920561-14920695)
chr4 (1-135)||(22707162-22707296)
chr4 (8-135)||(16724993-16725120)
chr4 (221-273)||(14920423-14920475)
[»] chr2 (3 HSPs)
chr2 (1-274)||(22945341-22945614)
chr2 (1-274)||(12379606-12379879)
chr2 (9-132)||(21764486-21764609)
[»] chr5 (15 HSPs)
chr5 (1-274)||(5444149-5444422)
chr5 (1-264)||(11948348-11948611)
chr5 (1-274)||(36379915-36380188)
chr5 (1-274)||(37004587-37004860)
chr5 (1-270)||(15788666-15788935)
chr5 (1-274)||(17953047-17953320)
chr5 (1-274)||(31516255-31516528)
chr5 (1-274)||(29896192-29896465)
chr5 (1-274)||(26872146-26872419)
chr5 (1-141)||(22955902-22956042)
chr5 (1-135)||(12392363-12392497)
chr5 (1-135)||(1801331-1801465)
chr5 (1-135)||(7790027-7790161)
chr5 (1-135)||(7258872-7259006)
chr5 (9-159)||(34464745-34464895)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-274)||(25109-25382)
[»] chr3 (14 HSPs)
chr3 (1-274)||(5954896-5955169)
chr3 (1-270)||(46376225-46376494)
chr3 (1-274)||(37260707-37260980)
chr3 (1-274)||(46397424-46397697)
chr3 (9-159)||(15596971-15597121)
chr3 (1-135)||(8807528-8807662)
chr3 (1-135)||(8619652-8619786)
chr3 (1-135)||(15534050-15534184)
chr3 (1-159)||(15914600-15914758)
chr3 (1-135)||(6197612-6197746)
chr3 (1-135)||(21610958-21611092)
chr3 (9-159)||(20439198-20439348)
chr3 (9-159)||(41436363-41436513)
chr3 (220-274)||(15597182-15597236)
[»] chr1 (4 HSPs)
chr1 (1-274)||(5633066-5633339)
chr1 (9-274)||(2340415-2340680)
chr1 (1-186)||(6201900-6202085)
chr1 (221-274)||(6202120-6202173)
[»] scaffold0595 (1 HSPs)
scaffold0595 (1-274)||(8923-9197)
[»] chr7 (11 HSPs)
chr7 (1-274)||(9465530-9465803)
chr7 (1-274)||(16397394-16397667)
chr7 (1-274)||(30373891-30374164)
chr7 (1-274)||(841259-841532)
chr7 (1-274)||(848435-848708)
chr7 (1-274)||(1206439-1206712)
chr7 (1-135)||(42635196-42635330)
chr7 (1-135)||(8813649-8813783)
chr7 (1-135)||(23883725-23883859)
chr7 (9-159)||(16291244-16291394)
chr7 (9-159)||(802377-802527)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-274)||(301852-302125)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-274)||(17736-18009)
[»] scaffold0183 (1 HSPs)
scaffold0183 (2-274)||(31302-31574)
[»] scaffold0094 (1 HSPs)
scaffold0094 (9-159)||(39320-39470)
[»] scaffold0104 (1 HSPs)
scaffold0104 (1-141)||(29286-29426)
[»] scaffold0435 (2 HSPs)
scaffold0435 (1-135)||(12844-12978)
scaffold0435 (1-135)||(13520-13654)
[»] scaffold0387 (1 HSPs)
scaffold0387 (1-187)||(6251-6437)
[»] scaffold0551 (2 HSPs)
scaffold0551 (1-135)||(4178-4312)
scaffold0551 (1-135)||(10292-10426)
[»] scaffold0441 (1 HSPs)
scaffold0441 (1-135)||(10248-10382)
[»] chr8 (1 HSPs)
chr8 (1-135)||(21480116-21480250)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 27513292 - 27513019
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513292 ccttctcacatacatttttagatgctcttcaggacaagaactccctttgtatttctcgaaatctgggatcttgaatttgtgaggtatctgcacacttggt 27513193  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513192 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 27513093  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27513092 ctccctcgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcataggt 27513019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 9140342 - 9140615
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  9140342 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacctgcacactcggt 9140441  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9140442 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 9140541  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9140542 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcagtttgcggaattgtatgtatcacaggt 9140615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 16821939 - 16822212
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  16821939 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 16822038  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    |||||||||||||| || || ||||| ||||||||  ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16822039 accaaacagagatcataagcggtctttccaaatttttctttcccacggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 16822138  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16822139 ctccctcgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 16822212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 2410847 - 2411032
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| |||||||| || |||||||| |||||||| ||| ||||||| || |||||||||| |||||  ||||| ||||| |||| ||| ||| |  |     
T  2410847 ccttcttacatacatcttcagatgctcttcaggacatgagttccctttatacttctcgaaatatgggactttgaacttgtggggtatctggacattcagc 2410946  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttc 186  Q
    ||||||||||||||||| || ||||| ||||||||  ||||  || |||||||| |||| |||||  | |||||||||||||||||    
T  2410947 accaaacagagatcgtaagcggtctttccaaatttttctttcccacggagagctctcatatctcgctgcagttcatcatacttttc 2411032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 2411740 - 2411606
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | |||||| |||||||| ||| ||||||| || ||||||||||||||||  ||||| ||||| |||| ||| ||| | ||     
T  2411740 ccttcttacatacattttcaaatgctcttcaggacaggagttccctttatacttctcgaaatctgggactttgaacttgtggggtatctggacattcggc 2411641  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    ||||||||||||||||| || ||||| ||||||||    
T  2411640 accaaacagagatcgtaagcggtctttccaaattt 2411606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 20055052 - 20055185
Alignment:
Q  2 cttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggta 101  Q
    ||||| ||||||||||| | ||| |||||||| || ||| ||||||| || ||||||||||| ||||||||||| |||||||||| ||| | | | || |    
T  20055052 cttcttacatacattttcaaatgttcctcagggcaggagttccctttatacttctcgaaatcagggatcttgaacttgtgaggtatctgaatattcggca 20055151  T
Q  102 ccaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||||| || ||||| ||||||||    
T  20055152 ccaaacagagatcgtaagcggtctttccaaattt 20055185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 620081 - 620215
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  620081 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 620180  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  620181 accaaacagagatcataagcggtctttccaaattt 620215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 24147624 - 24147758
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  24147624 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 24147723  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  24147724 accaaacagagatcataagcggtctttccaaattt 24147758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20044809 - 20044943
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| || |||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  20044809 ccttcttacgtacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 20044908  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  20044909 accaaacagagatcataagcggtctttccaaattt 20044943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 18039606 - 18039333
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18039606 ccttctcacatacatttttagatgctcttcaggacaagaactccctttgtatttctcgaaatctgggatcttgaatttgtgaggtatctgcacacttggt 18039507  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18039506 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 18039407  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18039406 ctccctcgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcataggt 18039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 15899683 - 15899816
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| |||||||| |||||| ||||||| || ||||||||||||||||||||||| ||||||||||  || ||| | ||     
T  15899683 ccttcttacatacattttcaaatgttcctcagggcaagagttccctttatacttctcgaaatctgggatcttgaagttgtgaggtatatggacattcggc 15899782  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatt 134  Q
    ||||||||||||||||| || ||||| |||||||    
T  15899783 accaaacagagatcgtaagcggtctttccaaatt 15899816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 14920695 - 14920561
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| |||||||| || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  14920695 ccttcttacatacattttcaaatgttcctcagggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 14920596  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  14920595 accaaacagagatcataagcggtctttccaaattt 14920561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 22707296 - 22707162
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  22707296 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctcaaaatctggaatcttgaacttgtgaggtatctggacattcggc 22707197  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  22707196 accaaacagagatcataagcggtctttccaaattt 22707162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 16724993 - 16725120
Alignment:
Q  8 acatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaac 107  Q
    ||||||||||| | ||| ||||||||  | ||| ||||||| || ||||  ||||||||||||||||| |||||||||| ||| ||| | || |||||||    
T  16724993 acatacattttcaaatgttcctcagggtaggagttccctttatacttctaaaaatctgggatcttgaacttgtgaggtatctggacattcggcaccaaac 16725092  T
Q  108 agagatcgtacgcagtcttcccaaattt 135  Q
    | ||||| || || ||||| ||||||||    
T  16725093 atagatcataagcggtctttccaaattt 16725120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 14920475 - 14920423
Alignment:
Q  221 ttccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacagg 273  Q
    ||||||||||| |||||||| |||||| |||| ||||| |||||||| |||||    
T  14920475 ttccctgaatggaagataggttcttcattttgtggaatggtatgcattacagg 14920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 22945614 - 22945341
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22945614 ccttctcacatacatttttagatgttcctcagggcaagaactccctttgtatttctcgaaatctgggatcttgaatttgtgaggcacctgcacacttggt 22945515  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22945514 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 22945415  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22945414 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 22945341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 12379879 - 12379606
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||    
T  12379879 ccttctcacatacatttttagatgttcctcagggcaagaactccctttgtatttctcgaagtctggaatcttgaatttgtgaggtacctgcacactcggt 12379780  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  12379779 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcgtcatacttttctcgtaggtcgctta 12379680  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12379679 cttcctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcgggattgtatgtatcacaggt 12379606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 21764486 - 21764609
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||| | ||||| |||||||| || ||| ||||||| || ||||||||||||||||  ||||| ||||| |||| ||| ||  | || ||||||||    
T  21764486 catacattgtcagatgttcctcagggcaggagttccctttatacttctcgaaatctgggactttgaacttgtggggtatctggacgttcggcaccaaaca 21764585  T
Q  109 gagatcgtacgcagtcttcccaaa 132  Q
    ||| || || ||||| || |||||    
T  21764586 gaggtcataagcagtttttccaaa 21764609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 5444149 - 5444422
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5444149 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacctgcacacttggt 5444248  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  5444249 accaaacagaggtcgtacgcagtcttcccaaatttccctttttcatggagagctttcacgtctcggcgtagttcatcatacttttctcgtaggtcgctta 5444348  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5444349 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 5444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 11948348 - 11948611
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11948348 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacctgcacacttggt 11948447  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11948448 accaaacagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcgctta 11948547  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatg 264  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11948548 cttcctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatg 11948611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 36379915 - 36380188
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  36379915 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaattttgaatttgtgaggtacctgcacacttggt 36380014  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  36380015 accaaacagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatactttgctcgtaggtcgctta 36380114  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36380115 cttcttcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 36380188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 37004587 - 37004860
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  37004587 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaattttgaatttgtgaggtacctgcacacttggt 37004686  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  37004687 accaaacagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatactttgctcgtaggtcgctta 37004786  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37004787 cttcttcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 37004860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 15788666 - 15788935
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15788666 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacctgcacacttggt 15788765  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||    
T  15788766 accaaacagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcactta 15788865  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcac 270  Q
    |  || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15788866 cctccccgtaagcctctgcattccctgaatgaaagataggctcttcagcttgcggaattgtatgcatcac 15788935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 17953320 - 17953047
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  17953320 ccttctcacatacatttttagatgttcctcaggacaagaacttcctttgtatttctcgaaatctgggatcttgaatttgtgaggcacctgcacactcggt 17953221  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  17953220 accaaacagagatcgtacgcagtcttcccaaatttccctttatcacggagggctttcatgtctcggcgtagttcatcatacttttcttgtaggtcgctta 17953121  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  17953120 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcagtttgcggaattgtatgtatcacaggt 17953047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 31516528 - 31516255
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||    
T  31516528 ccttctcacatacatttttagatgttcctcagggcaagaactccctttgtatttctcgaagtctggaatcttgaatttgtgaggcacctgcacactcggt 31516429  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31516428 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 31516329  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  31516328 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 31516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 29896465 - 29896192
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| || ||| ||||||| || |||||||||||||| ||||||||||||||||||| ||| ||| | ||     
T  29896465 ccttctcacatacatttttagatgttcctcagggcaggagttccctttatacttctcgaaatctggaatcttgaatttgtgaggtatctgaacattcggc 29896366  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||| |||||||| |||||||| |||||  || |||||||||||| ||||||  | ||||||||||||||||||||||  |  || |    
T  29896365 accaaacagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacgtctcgttgcagttcatcatacttttctcgtaagttactca 29896266  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
     ||| ||||||| |||    ||||||||||| ||||| |  |||||| |||| ||||| |||||||||||||||    
T  29896265 ttccatcgtaagtctccatgttccctgaatggaagatggattcttcattttgtggaatagtatgcatcacaggt 29896192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 26872419 - 26872146
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    ||||||||||||||||||||| || |||||||| || ||| ||||||| || ||||| |||| ||| ||||||||||||||||||| ||| ||| | ||     
T  26872419 ccttctcacatacatttttaggtgttcctcagggcaggagttccctttatacttctcaaaatttggaatcttgaatttgtgaggtatctgaacattcggc 26872320  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||| |||||||| ||||||||  | ||  || ||||||||||||  |||||  | ||||||||||||||||||||||  || || |    
T  26872319 accaaacagagatcgtaagcagtctttccaaatttttccttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactca 26872220  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||| || || |||||    ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||||    
T  26872219 ctccatcataggcctccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 26872146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 22955902 - 22956042
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| |||||||||| ||||| ||||||||||||||||| |||||||||| ||| ||  | ||     
T  22955902 ccttcttacatacattttcagatgttcctcagggcaggagttccctttgtacttctcaaaatctgggatcttgaacttgtgaggtatctggacgttcggc 22956001  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttcccttt 141  Q
    |||||| |||||||||| || |||||  ||||||| |||||    
T  22956002 accaaatagagatcgtaagcggtcttttcaaattttccttt 22956042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 12392363 - 12392497
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  12392363 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctcaaaatctggaatcttgaacttgtgaggtatctggacattcggc 12392462  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  12392463 accaaacagagatcataagcggtctttccaaattt 12392497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1801465 - 1801331
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  1801465 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 1801366  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  1801365 accaaacagagatcataagcggtctttccaaattt 1801331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7790161 - 7790027
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  7790161 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 7790062  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  7790061 accaaacagagatcataagcggtctttccaaattt 7790027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 7258872 - 7259006
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| || |||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||| ||| ||| ||| | ||     
T  7258872 ccttcttacgtacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaagtatctggacattcggc 7258971  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  7258972 accaaacagagatcataagcggtctttccaaattt 7259006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 34464895 - 34464745
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||| ||||||| |||||||| || ||| ||||||| || ||||| |||||||||| |||||| || ||||||| ||| ||  |||| ||||||||    
T  34464895 catacattgttagatgttcctcagggcaggagttccctttatacttctcaaaatctgggaccttgaacttatgaggtatctggacgtttggcaccaaaca 34464796  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||| || || ||||| || |||||| |  ||||| |  |||||||||||||    
T  34464795 gaggtcataagcagtttttccaaatctttcttttccgcggagagctttcat 34464745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 25382 - 25109
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||    
T  25382 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacttgcacactcggt 25283  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25282 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 25183  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25182 cttcctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 25109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 5954896 - 5955169
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5954896 ccttctcacatacatttttagatgttcctcaggacaagaacttcctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacactcggt 5954995  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5954996 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 5955095  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  5955096 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 5955169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 46376494 - 46376225
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46376494 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacctgcacacttggt 46376395  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||    
T  46376394 accaaacagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcactta 46376295  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcac 270  Q
    |  || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46376294 cctccccgtaagcctctgcattccctgaatgaaagataggctcttcagcttgcggaattgtatgcatcac 46376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 37260707 - 37260980
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37260707 ccttctcacatacattttgagatgttcctcaggacaagaacttcctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacactcggt 37260806  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37260807 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 37260906  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  37260907 cttcctcgtaagcctctacattccttgaatgaaagataggttcttcagtttgcggaattgtatgtatcacaggt 37260980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 46397424 - 46397697
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| |||||||| || ||| ||||||| || ||||||||||| ||||||||||| |||||||||| ||| | | | ||     
T  46397424 ccttcttacatacattttcaaatgttcctcagggcaggagttccctttatacttctcgaaatcggggatcttgaacttgtgaggtatctggatattcggc 46397523  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    |||||||| |||||||| || ||||| |||||||| ||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46397524 accaaacatagatcgtaagcggtctttccaaattttcctctctcgcggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 46397623  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46397624 ctccctcgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 46397697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 15596971 - 15597121
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||||| ||||| |||||||| |||||| ||||||| ||||||||||||||||| || ||||||||||| |||| ||| ||| | || || |||||    
T  15596971 catacattttcagatgttcctcagggcaagagttccctttatatttctcgaaatctggaattttgaatttgtggggtatctggacattcggcactaaaca 15597070  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||||||||| || ||||||||||| ||| ||||  || |||||||||||||    
T  15597071 gagatcgtaggcggtcttcccaaacttctctttcccacggagagctttcat 15597121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8807662 - 8807528
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  8807662 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctcaaaatctggaatcttgaacttgtgaggtatctggacattcggc 8807563  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  8807562 accaaacagagatcataagcggtctttccaaattt 8807528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8619786 - 8619652
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  8619786 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 8619687  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  8619686 accaaacagagatcataagcggtctttccaaattt 8619652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 15534050 - 15534184
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  15534050 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 15534149  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  15534150 accaaacagagatcataagcggtctttccaaattt 15534184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 15914758 - 15914600
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || |||||||||||||| || ||||||||||| |||| ||| ||| | ||     
T  15914758 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctcgaaatctggaattttgaatttgtggggtatctggacattcggc 15914659  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    || | |||||||||||| || ||||| ||||| ||| ||||   | |||||||||||||    
T  15914658 actagacagagatcgtaggcggtctttccaaacttctctttccgacggagagctttcat 15914600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6197746 - 6197612
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  6197746 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 6197647  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || |  ||||| ||||||||    
T  6197646 accaaacagagatcataagtggtctttccaaattt 6197612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 21611092 - 21610958
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  21611092 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctcaaaatctggaatcttgaacttgtgaggtatctggacattcggc 21610993  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||| | ||| || || ||||| ||||||||    
T  21610992 accaaacaaaaatcataagcggtctttccaaattt 21610958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 20439348 - 20439198
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||| ||||||| |||||||| || ||| ||||||| || ||||| |||||||||| |||||| || ||||||| ||| ||  |||| ||||||||    
T  20439348 catacattgttagatgttcctcagggcaggagttccctttatacttctcaaaatctgggaccttgaacttatgaggtatctggacgtttggcaccaaaca 20439249  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||| || || ||||| || |||||| |  ||||| |  |||||||||||||    
T  20439248 gaggtcataagcagtttttccaaatctttcttttccgcggagagctttcat 20439198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 41436513 - 41436363
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||| ||||||| |||||||| || ||| ||||||| || ||||| |||||||||| |||||| || ||||||| ||| ||  |||| ||||||||    
T  41436513 catacattgttagatgttcctcagggcaggagttccctttatacttctcaaaatctgggaccttgaacttatgaggtatctggacgtttggcaccaaaca 41436414  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||| || || ||||| || |||||| |  ||||| |  |||||||||||||    
T  41436413 gaggtcataagcagtttttccaaatctttcttttccgcggagagctttcat 41436363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 15597182 - 15597236
Alignment:
Q  220 attccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||||||||||| || || || |||||| |||| |||||||||||||||||||||    
T  15597182 attccctgaatggaaaattggttcttcactttgtggaattgtatgcatcacaggt 15597236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 5633066 - 5633339
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  5633066 ccttcttacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctggaatcttgaatttgtgaggtacctgcacgcttggt 5633165  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  5633166 accaagcagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcgctta 5633265  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5633266 cctcctcgtaagcctctgcattccctgaatgaaagatagactcttcagtttgcggaattgtatgcatcacaggt 5633339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 2340415 - 2340680
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||||||||||| |||||||| || ||| ||||||| || |||||||||||||| ||||||||||||||||||| ||| ||| | || ||||||||    
T  2340415 catacatttttagatgttcctcagggcaggagttccctttatacttctcgaaatctggaatcttgaatttgtgaggtatctgaacattcggcaccaaaca 2340514  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgcttactccctcg 208  Q
    ||||||||| |||||||| |||||||| |||||  || |||||||||||| ||||||  | ||||||||||||||||||||||  |  || | | | ||     
T  2340515 gagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacgtctcgttgcagttcatcatacttttctcgtaagttactcatttcatca 2340614  T
Q  209 taagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||| |||    ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||||    
T  2340615 taagtctccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 2340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 6201900 - 6202085
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| |||||||| || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | |      
T  6201900 ccttcttacatacattttcaaatgttcctcagggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcgac 6201999  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttc 186  Q
    |||||||||||||| || || || || |||||||| |||||  || |||||||  |||| |||||  | | ||||||||| |||||    
T  6202000 accaaacagagatcataagcggtttttccaaattttcctttcccacggagagccctcatttctcgatgcatttcatcatatttttc 6202085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 6202120 - 6202173
Alignment:
Q  221 ttccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    ||||||||||| |||||||| |||||| |||| ||||| |||||||| ||||||    
T  6202120 ttccctgaatggaagataggttcttcattttgtggaatggtatgcattacaggt 6202173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 9197 - 8923
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaattt-gtgaggtacctgcacacttgg 99  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9197 ccttctcacatacatttttagatgttcctcaggacaagaactccctttgtatttctcgaaatctgggatcttgaattttgtgaggtacctgcacacttgg 9098  T
Q  100 taccaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctt 199  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  9097 taccaagcagagatcgtacgcagtcttcccgaatttccctttttcatggagggctttcatgtctcggcgtagttcatcatacttctctcgtaggtcgctt 8998  T
Q  200 actccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    ||  || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8997 acctccccgtaagcctctgcattccctgaatgaaagataggctcttcagcttgcggaattgtatgcatcacaggt 8923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 9465803 - 9465530
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  9465803 ccttctcacatacatttttagatgttcctcagggcaagaacttcctttgtatttctcgaaatctgggatcttgaatttgtgaggcacctgcacactcggt 9465704  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9465703 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcgtcatacttttctcgtagatcgctta 9465604  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  9465603 cttcctcgtaagcctctgcattccctgaatgaaagataggcccttcggtttgcggaattgtatgtatcacaggt 9465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 16397394 - 16397667
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||    
T  16397394 ccttctcacatacatttttagatgttcctcagggcaagaactccctttgtatttctcgaagtctggaatcttgaatttgtgaggtacctgcacactcggt 16397493  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  16397494 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggaggactttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 16397593  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  16397594 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 16397667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 30373891 - 30374164
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||    
T  30373891 ccttctcacatacatttttagatgttcctcagggcaagaactccctttgtatttctcgaagtctggaatcttgaatttgtgaggtacctgcacactcggt 30373990  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  30373991 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgttta 30374090  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| ||||| |||||||| | |||||| |||||||||    
T  30374091 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcggtttgcgggactgtatgtatcacaggt 30374164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 841532 - 841259
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||| ||| ||||||||  | ||| ||||||| || ||||| |||||||| ||||||||||||||||||| ||| ||| | ||     
T  841532 ccttctcacatacatttttaaatgttcctcagggtaggagttccctttatacttctcaaaatctggaatcttgaatttgtgaggtatctgaacattcggc 841433  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||| |||||||| |||||||| |||||  || ||||||||||||  |||||  | ||||||||||||||||||||||  || || |    
T  841432 accaaacagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactca 841333  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||| || || || ||    ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||||    
T  841332 ctccatcataggcatccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 841259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 848708 - 848435
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||| ||| ||||||||  | ||| ||||||| || ||||| |||||||| ||||||||||||||||||| ||| ||| | ||     
T  848708 ccttctcacatacatttttaaatgttcctcagggtaggagttccctttatacttctcaaaatctggaatcttgaatttgtgaggtatctgaacattcggc 848609  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||| |||||||| |||||||| |||||  || ||||||||||||  |||||  | ||||||||||||||||||||||  || || |    
T  848608 accaaacagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactca 848509  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||| || || || ||    ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||||    
T  848508 ctccatcataggcatccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 1206712 - 1206439
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||| ||| ||||||||  | ||| ||||||| || ||||| |||||||| ||||||||||||||||||| ||| ||| | ||     
T  1206712 ccttctcacatacatttttaaatgttcctcagggtaggagttccctttatacttctcaaaatctggaatcttgaatttgtgaggtatctgaacattcggc 1206613  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||| |||||||| |||||||| |||||  || ||||||||||||  |||||  | ||||||||||||||||||||||  || || |    
T  1206612 accaaacagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactca 1206513  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||| || || || ||    ||||||||||| ||||| || |||||| |||| ||||| |||||||||||||||    
T  1206512 ctccatcataggcatccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 1206439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 42635196 - 42635330
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  42635196 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 42635295  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  42635296 accaaacagagatcataagcggtctttccaaattt 42635330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8813783 - 8813649
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||| | ||| ||| | ||     
T  8813783 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggcatctggacattcggc 8813684  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  8813683 accaaacagagatcataagcggtctttccaaattt 8813649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23883725 - 23883859
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  23883725 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctcaaaatctggaatcttgaacttgtgaggtatctggacattcggc 23883824  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
     ||||||||| ||| || || ||||| ||||||||    
T  23883825 gccaaacagaaatcataagcggtctttccaaattt 23883859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 16291244 - 16291394
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||| ||||||| |||||||| || ||| ||||||| || ||||| |||||||||| |||||| || || |||| ||| ||  |||| ||||||||    
T  16291244 catacattgttagatgttcctcagggcaggagttccctttatacttctcaaaatctgggaccttgaacttatggggtatctggacgtttggcaccaaaca 16291343  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||| || || ||||| || |||||| |  ||||| |  |||||||||||||    
T  16291344 gaggtcataagcagtttttccaaatctttcttttccgcggagagctttcat 16291394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 802377 - 802527
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||| | ||||| |||||||| || ||| ||||||| || || || |||||||||| |||||| || || |||| ||| ||  |||| ||||||||    
T  802377 catacattgtcagatgttcctcagggcaggagttccctttatacttttcaaaatctgggaccttgaacttatggggtatctggacgtttggcaccaaaca 802476  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||| || || ||||| || |||||| |  ||||| |  |||||||||||||    
T  802477 gaggtcataagcagtttttccaaatctttcttttccgcggagagctttcat 802527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 302125 - 301852
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||    
T  302125 ccttctcacatacatttttagatgttcctcagggcaagaactccctttgtatttctcgaagtctggaatcttgaatttgtgaggtacctgcacactcggt 302026  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  302025 accaaacagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgctta 301926  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    || |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  301925 cttcctcgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 301852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 17736 - 18009
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  17736 ccttcttacatacattttcagatgttcctcagggcaggagttccctttatacttctctaaatctggaatcttgaacttgtgaggtatctggacattcggc 17835  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgctta 200  Q
    ||||||||||||||||| |||||||| |||||||| |||||  || |||||||||||| ||||||  | ||||||||||||||||||||||  ||  | |    
T  17836 accaaacagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacgtctcgttgcagttcatcatacttttctcgtaagtcattca 17935  T
Q  201 ctccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    |||| || || |||||    ||||||||||| |||||||| |||||| |||| ||||| |||||||||||||||    
T  17936 ctccatcataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 31574 - 31302
Alignment:
Q  2 cttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggta 101  Q
    |||||||||||||||||  |||| |||||||| || ||| || |||| || |||||||||||| | |||||||| |||||||||| ||| ||| | ||||    
T  31574 cttctcacatacattttcggatgttcctcagggcaggagttctctttatacttctcgaaatctagaatcttgaacttgtgaggtatctggacattcggta 31475  T
Q  102 ccaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgcttac 201  Q
    |||||||||||||||| |||||||| ||||||||  ||||  || ||||||||||||  |||||  | ||||||||||||||||||||||  || || |     
T  31474 ccaaacagagatcgtaagcagtctttccaaatttttctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactcat 31375  T
Q  202 tccctcgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 274  Q
    ||  |  || |||||    | | ||||||| ||||||||||||||| |||| ||||| |||||||||||||||    
T  31374 tctattataggcctccatgtcctctgaatggaagataggctcttcattttgtggaatagtatgcatcacaggt 31302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 39320 - 39470
Alignment:
Q  9 catacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggtaccaaaca 108  Q
    |||||||||| ||||| |||||||| |||||| ||||||| ||||||||||||||||| || |||||| |||| |||| ||| ||| | || || |||||    
T  39320 catacattttcagatgttcctcagggcaagagttccctttatatttctcgaaatctggaattttgaatatgtggggtatctggacattcggcactaaaca 39419  T
Q  109 gagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcat 159  Q
    ||||||||| || ||||||||||| ||| ||||  || |||||||||||||    
T  39420 gagatcgtaggcggtcttcccaaacttctctttcccacggagagctttcat 39470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29286 - 29426
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||||| |||||| ||||||| || |||||||||||||||||| |||| ||||||||||  || ||| | ||     
T  29286 ccttcttacatacattttcagatgttcctcagggcaagagttccctttatacttctcgaaatctgggatcgtgaacttgtgaggtatatggacattcggc 29385  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttcccttt 141  Q
    | ||||||||||||||| || ||||| |||||||| |||||    
T  29386 aacaaacagagatcgtaagcggtctttccaaattttccttt 29426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 12844 - 12978
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||| ||||| |||||||| || ||| ||||||| || |||||||||||||| |||||||| |||||||||| ||| ||  | ||     
T  12844 ccttctcacatacattttcagatgttcctcagggcaggagttccctttatacttctcgaaatctggaatcttgaacttgtgaggtatctggacgttcggc 12943  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||| |||||||| || ||||| ||||||||    
T  12944 accaaacaaagatcgtaagcggtctttccaaattt 12978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 13520 - 13654
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||| ||||| |||||||| || ||| ||||||| || |||||||||||||| |||||||| |||||||||| ||| ||  | ||     
T  13520 ccttctcacatacattttcagatgttcctcagggcaggagttccctttatacttctcgaaatctggaatcttgaacttgtgaggtatctggacgttcggc 13619  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||| |||||||| || ||||| ||||||||    
T  13620 accaaacaaagatcgtaagcggtctttccaaattt 13654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 6251 - 6437
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||||||||||||||| ||||| |||||| |  |  || ||||||| || |||||||||||||||| |||||| ||||| ||||| || ||| | ||     
T  6251 ccttctcacatacattttcagatgttcctcaaggtagaagttccctttatacttctcgaaatctgggaccttgaacttgtggggtacttggacattcggc 6350  T
Q  101 accaaacagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttct 187  Q
    || |||||||||||||| || ||||| ||||||||  ||||  ||  ||||| ||||||||||||  | ||||||||||||||||||    
T  6351 acaaaacagagatcgtaagcggtctttccaaatttttctttcccacagagagttttcatgtctcgttgcagttcatcatacttttct 6437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4178 - 4312
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||| | || ||| ||||||| || ||||||||||||||||||||||| |||||||||| ||| ||| | ||     
T  4178 ccttcttacatacattttcagatgttcctcaaggcaggagttccctttatacttctcgaaatctgggatcttgaacttgtgaggtatctggacattcggc 4277  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    ||||||||||||| ||| || || || ||||||||    
T  4278 accaaacagagattgtaagcggtttttccaaattt 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 10292 - 10426
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||||| | || ||| ||||||| || ||||||||||||||||||||||| |||||||||| ||| ||| | ||     
T  10292 ccttcttacatacattttcagatgttcctcaaggcaggagttccctttatacttctcgaaatctgggatcttgaacttgtgaggtatctggacattcggc 10391  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    ||||||||||||| ||| || || || ||||||||    
T  10392 accaaacagagattgtaagcggtttttccaaattt 10426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 10382 - 10248
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| ||||| |||| ||| || ||| ||||||| || ||||| |||||||| |||||||| |||||||||| ||| ||| | ||     
T  10382 ccttcttacatacattttcagatgttccttagggcaggagttccctttatacttctcaaaatctggaatcttgaacttgtgaggtatctggacattcggc 10283  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || || ||||| ||||||||    
T  10282 accaaacagagatcataagcggtctttccaaattt 10248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 21480116 - 21480250
Alignment:
Q  1 ccttctcacatacatttttagatgctcctcaggacaagagctccctttgtatttctcgaaatctgggatcttgaatttgtgaggtacctgcacacttggt 100  Q
    |||||| ||||||||||| | ||| ||||| || || ||| ||||||| || ||||| ||||||||||||||||| |||||||||| ||| ||| | ||     
T  21480116 ccttcttacatacattttcaaatgttcctcggggcaggagttccctttatacttctcaaaatctgggatcttgaacttgtgaggtatctggacattcggc 21480215  T
Q  101 accaaacagagatcgtacgcagtcttcccaaattt 135  Q
    |||||||||||||| || |  ||||| ||||||||    
T  21480216 accaaacagagatcataagtggtctttccaaattt 21480250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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