View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12440_low_11 (Length: 266)

Name: NF12440_low_11
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12440_low_11
NF12440_low_11
[»] chr2 (3 HSPs)
chr2 (17-266)||(44224649-44224898)
chr2 (17-266)||(44235459-44235708)
chr2 (17-266)||(44212483-44212732)
[»] chr4 (2 HSPs)
chr4 (72-226)||(2885053-2885207)
chr4 (24-196)||(2899276-2899448)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 44224649 - 44224898
Alignment:
Q  17 tccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44224649 tccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga 44224748  T
Q  117 taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44224749 taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa 44224848  T
Q  217 acaaagcaccggcataaacacccgcatcatcctgatcattgcgatgcatc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44224849 acaaagcaccggcataaacacccgcatcatcctgatcattgcgatgcatc 44224898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 44235459 - 44235708
Alignment:
Q  17 tccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  44235459 tccaataacatagtaggtaagaaacacccatagagaaacttccactaatgagatgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga 44235558  T
Q  117 taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44235559 taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttaccagtgtgaaaa 44235658  T
Q  217 acaaagcaccggcataaacacccgcatcatcctgatcattgcgatgcatc 266  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  44235659 acaaagcaccagcataaacacccgcatcatcctgattattgcgatgcatc 44235708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 44212483 - 44212732
Alignment:
Q  17 tccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  44212483 tccaataacatagtaggtaagaaacacccagagagaaacttccactaatgagacgggaatcttgagaatccatgaaggaatagcatatgcccatgaggga 44212582  T
Q  117 taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44212583 taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa 44212682  T
Q  217 acaaagcaccggcataaacacccgcatcatcctgatcattgcgatgcatc 266  Q
    |||||||||| ||||||||||| || ||||||||||||| ||||||||||    
T  44212683 acaaagcaccagcataaacacctgcgtcatcctgatcatcgcgatgcatc 44212732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 2885207 - 2885053
Alignment:
Q  72 ggaatcttgagaatccacgaaggaatagcatatgcccatgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatag 171  Q
    ||||||||||| ||||| | ||| ||||||||||||||||| ||| |||| |||||||||| |||||||||| ||  ||||||||||||||||||||| |    
T  2885207 ggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaactaggaagcttagcaatggtcattg 2885108  T
Q  172 aaatctcagacattccattaaacatcatcgttactagtgtgaaaaacaaagcacc 226  Q
    |||  || | ||||||||||||||| ||| | |||| || |||||| ||||||||    
T  2885107 aaagttcggccattccattaaacataatcataactactgcgaaaaataaagcacc 2885053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 2899276 - 2899448
Alignment:
Q  24 acatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgagggataaaata 123  Q
    ||||| ||||| || || ||||||| || ||||||||  |||| ||  ||||||||||| ||||| | ||| ||||||||||||||||| ||| |||| |    
T  2899276 acataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaaca 2899375  T
Q  124 gaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacat 196  Q
    ||||||||| |||||||||| ||  ||||||||| ||||||||||| ||||  |||| || ||||||||||||    
T  2899376 gaaggtctctttgcttgtagaaactaggaagcttcgcaatggtcattgaaagttcagccaatccattaaacat 2899448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University