View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12440_low_12 (Length: 255)
Name: NF12440_low_12
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_low_12 |
 | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
| [»] scaffold0472 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 47877360 - 47877111
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
47877360 |
ctttatgacttgactgttaacaaatcaatctcagttaggaatatgttcttgttgggggtggacgtgggtggggaggcgttgcggtggcgtaggcggttgt |
47877261 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
47877260 |
gggcttgggaggaagagttggtagaggagtgtggggttttattactaacagtttccttgcaggaatcagtgacagacagatgactttggttacctaatca |
47877161 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
47877160 |
ggatggtgggtattatgtacgtggagtttatgacatgctgacatcacagg |
47877111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 235201 - 235449
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
235201 |
ctttatgacttggctgttaacaaatcaatctcagttatgaatatgttcttgttgggg-tggacgtgggtggggaggcgttgcggtggcgtcagcgattgt |
235299 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| || || || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
235300 |
gggcttgggaggaaaagttggtagaggagtgtagggttttattactaacagtttccttacaggaatcagtgacagatagatgactttggttaccaaatca |
235399 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
235400 |
ggatggtgggtattctgtacgtggagtctatgacatgttgacatcacagg |
235449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 17721012 - 17720763
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||| | ||||||| |
|
|
| T |
17721012 |
ctttatgacttgactgtgaacaaactaatctctgttaggaacatgatcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgt |
17720913 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || || |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
17720912 |
gggcttgggaggaagagttggtagaggagtttanggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactca |
17720813 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||| |||||||| || ||||||| |||||||||||| |||||||||| |
|
|
| T |
17720812 |
ggatgatgggtattccgttcgtggagcctatgacatgctgacatcacagg |
17720763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 11277015 - 11277264
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11277015 |
ctttttgacttgaatgtagacaaatcaatctcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgt |
11277114 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| |||||| ||||||||||| ||||| | |||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
11277115 |
gggcttgggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatca |
11277214 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||| | |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
11277215 |
tgatgatgggtactctgtacgtggagtctatgatatgctgacatcacagg |
11277264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 4937891 - 4938140
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
4937891 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
4937990 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
4937991 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatca |
4938090 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
4938091 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
4938140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37919921 - 37919672
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| || |||||||| || ||||| |||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||| |
|
|
| T |
37919921 |
ctttttgacttgaatgttaaaaaatcaatttcagttagaaatatgttcttgttgggggtggatgtgggtgggggggtgttgcggtggcgtaggcggttgt |
37919822 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||| |||||||||||||||||||| ||||| | |||||||||| | | ||||||||| ||||| || || |
|
|
| T |
37919821 |
gggcttgggaggagaagttggtagaggagtgtagagttttattactaacagtttctttgcaggaatcagtgacaaacatatggctttgattacctaaaca |
37919722 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||| |||||||||| ||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
37919721 |
ggagggtgggtattctgtgcgtggagtatatgacatgctgacatcacagg |
37919672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 29968351 - 29968103
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||| | |||| | |
|
|
| T |
29968351 |
ctttttgacttgagtgttcacaaatcaatctccgttagaaactttttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttat |
29968252 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||||| || ||||| |||||||||||| |||||| ||||||||||| ||||| | |||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
29968251 |
gggcttgagaggaggaattggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatca |
29968152 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| | |||| | ||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
29968151 |
tgatgat-ggtactctgtacgtggagcctatgatatgctgacatcacagg |
29968103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 35983557 - 35983803
Alignment:
| Q |
4 |
tatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtggg |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||| |
|
|
| T |
35983557 |
tatgacttgactgtgaacaaaccaatctctgttaggaatatgttcttgttgggggtggatgagggtggggaggcgttgaggtggcgtaggcggttgtggg |
35983656 |
T |
|
| Q |
104 |
cttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatcagga |
200 |
Q |
| |
|
||| |||||| |||||||| |||||| ||||| ||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35983657 |
cttaggaggaggagttggtagaggagtttagggctttattactaacagtttcattacaggaatcagtgacagatagatagctttggttaccaaatcagga |
35983756 |
T |
|
| Q |
201 |
tggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
35983757 |
tggtgggtactctgtacgtggagcctatgacatgctgacatcacagg |
35983803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 28535438 - 28535687
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||| |
|
|
| T |
28535438 |
ctttatgacttgactgtgaacaatccaatctctgttaggaatatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggtggttgt |
28535537 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
28535538 |
gggcttgagaggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaatcaatgacagatagatggctttggttaccaactca |
28535637 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||| |||| | ||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
28535638 |
ggatggtaggtactctgtacatggagcctatgacatgctgacatcacagg |
28535687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 42928505 - 42928259
Alignment:
| Q |
4 |
tatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtggg |
103 |
Q |
| |
|
||||||||| |||| || ||||||||| | |||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
42928505 |
tatgacttggctgttaataaatcaatcacagttaggaatatgttcttgttggaggcggatgtgggtggggaggcgttgcagtggcgtcggcggttgtggg |
42928406 |
T |
|
| Q |
104 |
cttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatcagga |
200 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| || |||| || || | ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
42928405 |
cttgggaggaagagttggtagaggagtgtagggttttattacttaccgtttttttacaggaatcagtgacagatagatggttgtggttaccaaatcagga |
42928306 |
T |
|
| Q |
201 |
tggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
42928305 |
tggtgggtattctgtacgtggagtctatgacatgctgacatcgcagg |
42928259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 31641888 - 31641639
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| || ||||||||||||||| |||||| | ||||||| |
|
|
| T |
31641888 |
ctttatgacttgactgtgaacaaaccaatctctgttaggaacatgttcttgatgggggtggaggtcggtggggaggcgttgaggtggcgtaggcggttgt |
31641789 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
31641788 |
gggcttgggaggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactca |
31641689 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||| ||| |||| || ||||||| ||||||||||| |||||||||| |
|
|
| T |
31641688 |
ggatgatggatattccgttcgtggagcatatgacatgctgacatcacagg |
31641639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 30732077 - 30732326
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
30732077 |
ctttttgacttgactgctcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
30732176 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| | |||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
30732177 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca |
30732276 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
30732277 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
30732326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 12825576 - 12825327
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
12825576 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
12825477 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||| || |||||||| |||||||||||| ||| |||||||||||||| ||||| | |||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
12825476 |
gggcttgggatgaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca |
12825377 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
12825376 |
tgatgatgggtattctgcacgtggagtctatgacatgctgacatcacagg |
12825327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 42514097 - 42513848
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
42514097 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttccttctgggggtggatgtggggggggaggcgttgaggtggcgtaggcggttgt |
42513998 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
42513997 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatca |
42513898 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42513897 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
42513848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 23238760 - 23238512
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
23238760 |
ctttttgacttgagtgtacacaaatcaatctccgttaggaatatgttcttgttaggg-tggatttgggtggggaggcgttgcggtggcgtaggaggttgt |
23238662 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||| |||||| ||||||||||| ||||| || ||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
23238661 |
gggccagggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatca |
23238562 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||| | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23238561 |
tgatgatgggtactctgtacgtggagtctatgatatgctaacatcacagg |
23238512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 27116946 - 27117173
Alignment:
| Q |
23 |
aatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggt |
122 |
Q |
| |
|
||||| |||| ||||||||||||||| || |||||||||||||||| || ||||||||| |||||| | ||||||||||| | |||||| | |||||| |
|
|
| T |
27116946 |
aatcagtctcagttaggaatatgttcctgctgggggtggatgtgggcggagaggcgttgaggtggcgtaggcggttgtgggcctgggaggaggggttggt |
27117045 |
T |
|
| Q |
123 |
ag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgtacgt |
219 |
Q |
| |
|
|| |||||||||| ||| |||||||||||||| ||||| || ||||||| ||| |||||||| |||||||| ||| | |||| |||||||| ||||||| |
|
|
| T |
27117046 |
agaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatgggtattctgtacgt |
27117145 |
T |
|
| Q |
220 |
ggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
27117146 |
ggagtctatgacatgctgacatcacagg |
27117173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 13396765 - 13396516
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
13396765 |
ctttttgacttgaatgttaacaaatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgt |
13396666 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||||||||||||||||| |||| ||||| | |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13396665 |
gggcttgggaggaggagttggtagaggagtgtagggttttattactaacaatttctttgcaggaatcagtgacagacagatggctttggttacctaatca |
13396566 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
13396565 |
ggagggtgggtattctgtacgtggggtctatgacatgctgacatcacagg |
13396516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 9922978 - 9922729
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||| |
|
|
| T |
9922978 |
ctttatgacttgactgtgaacaaaccaatctctgttaggaacatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgt |
9922879 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
9922878 |
gggcttgggaggaagagttggtagaggagtctagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactca |
9922779 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||| ||||| || || ||||||| |||||||||||| |||||||||| |
|
|
| T |
9922778 |
ggatgatgggttttccgttcgtggagcctatgacatgctgacatcacagg |
9922729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 41665132 - 41665381
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
41665132 |
ctttttgacttgaatgttaacagatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggtgttgcggtggcgtaggcggttgt |
41665231 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||| || || | |||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
41665232 |
gggcttgggaggaggagttggtagaggagtgtagggttttattactaacagtttctttacaggaatcagtgacagacagatgactttggttacctaatta |
41665331 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||| |||||||||| |||| |||| |||||||||||||| |||||||||| |
|
|
| T |
41665332 |
ggagggtgggtattctgtatgtggggtctatgacatgctgacatcacagg |
41665381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7924763 - 7924514
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
7924763 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
7924664 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
7924663 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatca |
7924564 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
7924563 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
7924514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 8300180 - 8299931
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| || ||||||| |
|
|
| T |
8300180 |
ctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgt |
8300081 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| | ||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
8300080 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca |
8299981 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
8299980 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
8299931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32266939 - 32266707
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| ||||| || | |||||||| |||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
32266939 |
ctttttgacttgagtgttcacaaatcaatctccgttagaaactttttcttgttcggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgt |
32266840 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||| | |||||| |||||||| |||||||||||| |||||| ||||||||||| ||||| | ||||||| |||| |||||||||||| |||| ||||| |
|
|
| T |
32266839 |
gggcctgggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgtcagacagatggctttgggtacctaatca |
32266740 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatga |
230 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| |
|
|
| T |
32266739 |
tgatgatgggtattctgtacgtggagcctatga |
32266707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 172458 - 172231
Alignment:
| Q |
23 |
aatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggt |
122 |
Q |
| |
|
||||| |||| ||||||||||||||| || || ||||||||||||| |||||||||||| |||||| | ||||||||||| | |||||| ||||||| |
|
|
| T |
172458 |
aatcagtctcagttaggaatatgttcctgctgagggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcctgggaggagaagttggt |
172359 |
T |
|
| Q |
123 |
ag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgtacgt |
219 |
Q |
| |
|
|| |||||||||| ||| ||||||| |||||| ||||| || ||||||| ||| |||||||| |||||||| ||| | |||| |||||||| ||||||| |
|
|
| T |
172358 |
agaggagtgtagggctttgttactaatagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatgggtattctgtacgt |
172259 |
T |
|
| Q |
220 |
ggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
172258 |
ggagtctatgacatgctgacatcacagg |
172231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 13879271 - 13879410
Alignment:
| Q |
22 |
aaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttgg |
121 |
Q |
| |
|
||||||||| | || ||||| ||||||||||| |||||||| | ||||||| |||| || ||||| || ||||| |||| | |||||| || |||| |
|
|
| T |
13879271 |
aaatcaatcacggtgaggaacatgttcttgttcggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttgg |
13879370 |
T |
|
| Q |
122 |
tag--gagtgtagggttttattactaacagtttcattgca |
159 |
Q |
| |
|
||| |||||||||| ||||||||||||||| || ||||| |
|
|
| T |
13879371 |
tagaggagtgtagggctttattactaacagtctctttgca |
13879410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 40930302 - 40930540
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttggggg-tggatgtgggtggggaggcgttgcggtggcatcaacggttg |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40930302 |
ctttatgacttggctgtgaacaaatcaatctctgttaggaatatgttcttgttggggggtggatgtgggtggggaggcgttgcggtgg------------ |
40930389 |
T |
|
| Q |
100 |
tgggcttcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatc |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
40930390 |
tgggcttgggaggaagagttggtagaggagtgtagggttttattactaacagtttctttgcaagaatcagtgacaaatagatggctttggttaccaaatc |
40930489 |
T |
|
| Q |
197 |
aggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
40930490 |
aggatggtgtgtattctgtacgtggagtctatgacatgctgacatcacagg |
40930540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 34332578 - 34332827
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
34332578 |
ctttttgacttgaatgttatcaaatcaatctcagttaggaatatgttcttgttgggggtggacatgggtggggaggcgttgcggtggcgtaggcggttgt |
34332677 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
34332678 |
gggcttgggaggaggagttggtagaggagtgtagggttttattactaacagtttctttgcaggaatcagtgtcagacagatggctttggttacctaatca |
34332777 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
34332778 |
ggatggtgggtattatgtacgtggagcctatgacatgctgacatcacagg |
34332827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2364654 - 2364405
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
2364654 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
2364555 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| | ||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
2364554 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca |
2364455 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
2364454 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
2364405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 10323353 - 10323583
Alignment:
| Q |
20 |
acaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagtt |
119 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||| ||||| |
|
|
| T |
10323353 |
acaattcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagtt |
10323452 |
T |
|
| Q |
120 |
ggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgta |
216 |
Q |
| |
|
||| |||||||||||| ||| |||||||||||||| ||||| || |||||| |||||||||||| | |||||| ||||| | || |||||||| ||| |
|
|
| T |
10323453 |
ggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctagttacctaatcaagctgatgggtattcagta |
10323552 |
T |
|
| Q |
217 |
cgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |
|
|
| T |
10323553 |
cgtggagtctatgatatgctgacatcacagg |
10323583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 19919992 - 19920241
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||| |||||||||||||| || |||||||||||||||| |||||||| ||| |||| | | |||||| |
|
|
| T |
19919992 |
ctttttgacttgactgttcacaaatctatctcagttaggaatatgtttctgctgggggtggatgtgggcggggaggcattgaggtgtcgtaggaggttgt |
19920091 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||| ||| |||||||||||||| ||||| || ||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
19920092 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca |
19920191 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
19920192 |
tgatgatgggtattctgtacgtggagtctatgacatgttgacatcacagg |
19920241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 247
Target Start/End: Complemental strand, 7313112 - 7312904
Alignment:
| Q |
42 |
tatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggtag--gagtgtagggtttta |
139 |
Q |
| |
|
||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||||||||| |||||| |||||||||| |||||||||| ||| |
|
|
| T |
7313112 |
tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg |
7313013 |
T |
|
| Q |
140 |
ttactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgtacgtggagtctatgacatgctaa |
238 |
Q |
| |
|
|||||||||||||| ||||| || ||||||| ||| |||||||| |||||||| ||||| |||| |||||||| |||||||||||||||||||||||| | |
|
|
| T |
7313012 |
ttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctga |
7312913 |
T |
|
| Q |
239 |
catcacagg |
247 |
Q |
| |
|
||||||||| |
|
|
| T |
7312912 |
catcacagg |
7312904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 7032587 - 7032434
Alignment:
| Q |
97 |
ttgtgggcttcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaa |
193 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||| ||||||| || || |||| ||||||||||||||||||| || |
|
|
| T |
7032587 |
ttgtgggcttgggaggaagagttggtagaggagtttagggctttattactaacagttacattgcaggaatcggtgatagatagatggctttggttattaa |
7032488 |
T |
|
| Q |
194 |
atcaggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|| ||| |||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
7032487 |
ttctggacggtgggtattttgttcgtggagtctatgacatgctgacatcacagg |
7032434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 26770925 - 26771001
Alignment:
| Q |
171 |
agatagatggctttggttaccaaatcaggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||| | ||||||||| |||||| ||| ||||||| || ||||| || |||||||||||||||| ||||| |
|
|
| T |
26770925 |
agatagatggttgtggttaccagatcagggtggcgggtattcagttcgtggtgtgtatgacatgctaacattacagg |
26771001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 19755644 - 19755397
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
19755644 |
ctttttgacttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgt |
19755545 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
19755544 |
gggcttaggaggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca |
19755445 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcaca |
245 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
19755444 |
ggagggtgggtattctgtacgtggggtctatgacatgctgacatcaca |
19755397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19784162 - 19784409
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
19784162 |
ctttttgacttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgt |
19784261 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
19784262 |
gggcttaggaggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca |
19784361 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcaca |
245 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
19784362 |
ggagggtgggtattctgtacgtggggtctatgacatgctgacatcaca |
19784409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15740598 - 15740353
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
15740598 |
ctttttgacttgaatgttcacaaatcaatctctgttaggaatatattcttgttgggggtagacgtgggaggggaggcgttgcagtggcataggcggttgt |
15740499 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| |||||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15740498 |
gggcttgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca |
15740399 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatca |
243 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| | |||||| |
|
|
| T |
15740398 |
tgatggtgggtattctgtacgtggagtctatgatatgttgacatca |
15740353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23642354 - 23642603
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
23642354 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
23642453 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
23642454 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatca |
23642553 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
23642554 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
23642603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 1828322 - 1828552
Alignment:
| Q |
20 |
acaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagtt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
1828322 |
acaaatctatctctgttaggaatatgttcttgttgggggtagacgtgggaggggaggcgttgtggtggcataggcggttgtgggcttgggaggaggagtt |
1828421 |
T |
|
| Q |
120 |
ggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgta |
216 |
Q |
| |
|
||| ||||||| |||| |||||||||||||||||| ||||| || |||||||| || | ||||||||||||||| ||||| ||||||||||||| ||| |
|
|
| T |
1828422 |
ggtagaggagtggagggctttattactaacagtttctttgcaggattcagtgactgacaaatggctttggttacctaatcatgatggtgggtattccgta |
1828521 |
T |
|
| Q |
217 |
cgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||| |||||| ||| | |||||||||| |
|
|
| T |
1828522 |
cgtggagcctatgatatgttgacatcacagg |
1828552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 47685685 - 47685905
Alignment:
| Q |
28 |
atctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggt--agg |
125 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | ||| ||||||||| |||||| |||||||| ||| |
|
|
| T |
47685685 |
atctcagttaggaatatgttcttgttgggggtggatgtgggcggggaggcattgaggtggcgtgggcggctgtgggcttgggaggaggagttggtagagg |
47685784 |
T |
|
| Q |
126 |
agtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgtacgtggagt |
224 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||| | ||| |||| ||| ||||||||||||||||| ||||| |||| |||||||| ||| |||||||| |
|
|
| T |
47685785 |
agtgtagggctttgttactaacagtttctttgcaggaatcggtgatagacagatggctttggttacctaatcatgatgatgggtattctgttcgtggagt |
47685884 |
T |
|
| Q |
225 |
ctatgacatgctaacatcaca |
245 |
Q |
| |
|
||| |||||||| |||||||| |
|
|
| T |
47685885 |
ctacgacatgctgacatcaca |
47685905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 47419162 - 47418932
Alignment:
| Q |
20 |
acaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagtt |
119 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||| ||| | |
|
|
| T |
47419162 |
acaattcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggaggt |
47419063 |
T |
|
| Q |
120 |
ggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgta |
216 |
Q |
| |
|
||| |||||||||||| ||| ||||||||| |||| ||||| || |||||| |||||||||||| |||||||| ||||| | || |||||||| ||| |
|
|
| T |
47419062 |
ggtagaggagtgtagggctttgttactaacaatttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagta |
47418963 |
T |
|
| Q |
217 |
cgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |
|
|
| T |
47418962 |
cgtggagtctatgatatgctgacatcacagg |
47418932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 7404167 - 7404041
Alignment:
| Q |
126 |
agtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatg----gtgggtattttgtacgtg |
220 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| || ||||||||| |||||||| | ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
7404167 |
agtgtagggttttattacttacagtttccttgcaagaatcagtgacaaatagatggttatggttaccaaatcaggatgcatggtgggtattctgtacgtg |
7404068 |
T |
|
| Q |
221 |
gagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
7404067 |
gagtctatgacatgctgacatcacagg |
7404041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 13270831 - 13270903
Alignment:
| Q |
175 |
agatggctttggttaccaaatcaggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||| |||||||| ||||| |||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13270831 |
agatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
13270903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 54482958 - 54483082
Alignment:
| Q |
37 |
aggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggtag--gagtgtaggg |
134 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||| |||| || ||||| || ||||| |||| | |||||| || ||||||| |||||||||| |
|
|
| T |
54482958 |
aggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggatttggtagaggagtgtaggg |
54483057 |
T |
|
| Q |
135 |
ttttattactaacagtttcattgca |
159 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
54483058 |
gtttattactaacagtctctttgca |
54483082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 48242718 - 48242631
Alignment:
| Q |
37 |
aggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggtag |
124 |
Q |
| |
|
||||| |||||||||||||| ||||| || || |||||||||| || ||||| || || ||||||| || ||||||||| ||||||| |
|
|
| T |
48242718 |
aggaacatgttcttgttgggtgtggaggttggcggggaggcgtggcagtggcgacatcgtttgtgggtttgggaggaagaattggtag |
48242631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 24767195 - 24767436
Alignment:
| Q |
4 |
tatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtggg |
103 |
Q |
| |
|
||||||||| |||| |||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
24767195 |
tatgacttggctgttaacaaatcaatcacagttaggaatatgttcttgttgggcgtggacgtgggtggggaggcgttgcggtggcgtcgacggttgtggg |
24767294 |
T |
|
| Q |
104 |
cttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatgatcagtgacagatagatggctttggttaccaaatcaggat |
201 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| |||||||||||||||| | ||| ||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
24767295 |
cttgggaggaagagttggtagaggagtgtagggttgtattactaacagtttc----cttgaagagtgacaaatagatggctatggttaccaaatcaggat |
24767390 |
T |
|
| Q |
202 |
ggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
24767391 |
gataggtattctgtacgtggagtctatgacatgctgacatcacagg |
24767436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 21168570 - 21168327
Alignment:
| Q |
6 |
tgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggct |
105 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| ||| | || ||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
21168570 |
tgacttgaatgttcacaaatcaatctctgttaggaatatgttcttgttaggg-tagacgtgggaggggaggcgttgcggtggcgtaggcggttgtgggct |
21168472 |
T |
|
| Q |
106 |
tcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatcaggatg |
202 |
Q |
| |
|
| |||||| |||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
21168471 |
tgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcatgatg |
21168372 |
T |
|
| Q |
203 |
gtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| | |||||||||| |
|
|
| T |
21168371 |
gtgggtattctgtacgtggagtctatgatatgttgacatcacagg |
21168327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2554014 - 2553767
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
2554014 |
ctttttgacttgaatgttcacaaatcaatcttagttaggaatatgttcttgttgggggtggacgtgggtggggaagcgttgcggtggcgtaggcggttgt |
2553915 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||| | ||||||| |||||||||||| |||||||||||||||||| ||||| | |||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
2553914 |
gggcttgggagtagaagttggtaaaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttgattacctaatca |
2553815 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcaca |
245 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
2553814 |
tgatggtgggtattctgtacgtggagtctatgatatgctgacatcaca |
2553767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 18651170 - 18651246
Alignment:
| Q |
171 |
agatagatggctttggttaccaaatcaggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
18651170 |
agatagatggttgtggttaccaaatcaggatggtgggtattctgtacatggagtctatgacatgctgacatcacagg |
18651246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 15958579 - 15958825
Alignment:
| Q |
4 |
tatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtggg |
103 |
Q |
| |
|
||||| ||| |||| |||||| |||| | |||||| ||||||||||| ||| ||||||||| ||||||||||||| || || || || || || |||| |
|
|
| T |
15958579 |
tatgatttggctgtcaacaaagtaatcacagttaggcatatgttcttgctggaggtggatgttggtggggaggcgtggcagttgcgtcgtcgtttatggg |
15958678 |
T |
|
| Q |
104 |
cttcggaggaagagttggtag--gagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatcagga |
200 |
Q |
| |
|
| | | ||||| | ||| ||| || ||||||||||||||||| |||||||| ||||| | |||| || | ||||||||| | |||||||| |||| | |
|
|
| T |
15958679 |
cgtggtaggaaaacttgttagaggaatgtagggttttattactgacagtttctttgcaggaatcattgcctgatagatggttgtggttaccggatcaagg |
15958778 |
T |
|
| Q |
201 |
tggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||||||| || || || || | ||||||||| |||||||||| |
|
|
| T |
15958779 |
tggtgggtattcagttcgcggtgtgtctgacatgctgacatcacagg |
15958825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 105606 - 105855
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
105606 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
105705 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
105706 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatca |
105805 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
105806 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
105855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 6050980 - 6050731
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
6050980 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
6050881 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatga-tcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| || |||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
6050880 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatca |
6050781 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
6050780 |
tgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
6050731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 11908868 - 11909117
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
11908868 |
ctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcatgatgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgt |
11908967 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| |||||||||||||| ||||| | |||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
11908968 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca |
11909067 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
11909068 |
tgatgatgggtattctatacgtggagtctatgacatgctgacatcacagg |
11909117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 35541426 - 35541177
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||| |||||| || ||||||| |
|
|
| T |
35541426 |
ctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgt |
35541327 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| ||| ||||||||||||| ||||| | ||||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
35541326 |
gggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttttttgcaggaatcagtgttagacagatggctctggttacctaatca |
35541227 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
35541226 |
tgatgatgggtattctgttcgtggagtctatgacatgctgacatcacagg |
35541177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 51052693 - 51052608
Alignment:
| Q |
162 |
atcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||||||| ||| |||||||| |||||||| ||||| |||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
51052693 |
atcagtgatagacagatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
51052608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 2491556 - 2491437
Alignment:
| Q |
34 |
gttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggt--aggagtgta |
131 |
Q |
| |
|
|||||| |||||||| |||||| ||||| | ||||||| ||||| || ||||| || || |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2491556 |
gttaggtatatgttccagttgggtgtggaggctggtgggggggcgtggcagtggcgtcgtcgtttgtgggcttgggaggaagagttggtagaggagtgta |
2491457 |
T |
|
| Q |
132 |
gggttttattactaacagtt |
151 |
Q |
| |
|
|||| ||||||| |||||| |
|
|
| T |
2491456 |
gggtactattacttacagtt |
2491437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 41207370 - 41207144
Alignment:
| Q |
24 |
atcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttggt- |
122 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| | ||||||||||||||| |
|
|
| T |
41207370 |
atcaatcacagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcaatggcgtcgtcggttgtgggcatgggaggaagagttggta |
41207271 |
T |
|
| Q |
123 |
-aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatcaggatggtgggtattttgtacgtg |
220 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||| | ||||||| ||||||||||| | ||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
41207270 |
gaggagtgtagggttttattatttacagtttccttgcaggaatcagtggcagatagatggttgtggttaccagatcaggatggtgggtattcagtatgtg |
41207171 |
T |
|
| Q |
221 |
gagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| ||||||||||| ||||| |||| |
|
|
| T |
41207170 |
gagtttatgacatgctgacatcgcagg |
41207144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 4552359 - 4552297
Alignment:
| Q |
185 |
ggttaccaaatcaggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
||||||| ||||| |||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
4552359 |
ggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg |
4552297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 40177024 - 40176885
Alignment:
| Q |
22 |
aaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgtgggcttcggaggaagagttgg |
121 |
Q |
| |
|
||||||||| | || ||||| |||||||||||||||||||| | ||||||| |||| || ||||| || ||||| |||| | |||||| || |||| |
|
|
| T |
40177024 |
aaatcaatcacggtgaggaagatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttgg |
40176925 |
T |
|
| Q |
122 |
tag--gagtgtagggttttattactaacagtttcattgca |
159 |
Q |
| |
|
||| |||||||||| ||||||||||||||| || ||||| |
|
|
| T |
40176924 |
tagaggagtgtagggctttattactaacagtctctttgca |
40176885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 17764754 - 17764808
Alignment:
| Q |
34 |
gttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggc |
88 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||| |
|
|
| T |
17764754 |
gttaggaatatgttcttgtttggggtggatgtcggtggggagacgtggcagtggc |
17764808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3629 - 3380
Alignment:
| Q |
1 |
ctttatgacttgactgtgaacaaatcaatctctgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcatcaacggttgt |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
3629 |
ctttttgacttgagtgtacacaaatctatctccgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgt |
3530 |
T |
|
| Q |
101 |
gggcttcggaggaagagttggt--aggagtgtagggttttattactaacagtttcattgcatg-atcagtgacagatagatggctttggttaccaaatca |
197 |
Q |
| |
|
|||| | |||||| |||||||| |||||||||||| |||||||||||||||||| || || | |||||||||||| |||||||||||| |||| || || |
|
|
| T |
3529 |
gggcctgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttacaggaatcagtgacagacagatggctttgggtacctaacca |
3430 |
T |
|
| Q |
198 |
ggatggtgggtattttgtacgtggagtctatgacatgctaacatcacagg |
247 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
3429 |
tgatgatgggtactcagtacgtggagtctatgatatgctgacatcacagg |
3380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University