View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12440_low_15 (Length: 238)
Name: NF12440_low_15
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44224973 - 44225195
Alignment:
| Q |
1 |
agttatgtcacagaaaatcatggtcatgaatgtataaatgaaaaagaatttctatttcacttttataaaagagcgggatagattccaaacctgagttagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44224973 |
agttatgtcacagaaaatcatggtcatgaatgtataaatgaaaaagaatttctatttcacttatataaaagagcgggatagattccaaacctgagttagc |
44225072 |
T |
|
| Q |
101 |
ttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225073 |
ttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtgg |
44225172 |
T |
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| Q |
201 |
tcaaagcagctggatggctcttc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44225173 |
tcaaagcagctggatggctcttc |
44225195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 44212808 - 44213034
Alignment:
| Q |
2 |
gttatgtcacagaaaatcatggtcatgaatgtataaatgaaaaagaatttctatttcacttttat------aaaagagcgggatagattccaaacctgag |
95 |
Q |
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| T |
44212808 |
gttatgtcacagaaaatcatggtcatgaatgtataaatgaaaaagataatctattt-acttatatttataaaaaagagcgggatagattacaaacctgag |
44212906 |
T |
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| Q |
96 |
ttagcttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactcttt |
195 |
Q |
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| T |
44212907 |
ttagcttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactcttt |
44213006 |
T |
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| Q |
196 |
ggtggtcaaagcagctggatggctcttc |
223 |
Q |
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| T |
44213007 |
ggtggtcaaagcagctggatggctcttc |
44213034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 44235784 - 44236009
Alignment:
| Q |
2 |
gttatgtcacagaaaatcatggtcatgaatgtataaatgaaaaagaatttctatttcact---tttataaaa-gagcgggatagattccaaacctgagtt |
97 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||| || | ||||||||| ||||||||||||||||||||||||||| |
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| T |
44235784 |
gttatgtcacagaaaatcatggtgatgaatgtataaatgaaaaagaatatctacttgcttatatttataaaaagagcgggatagattccaaacctgagtt |
44235883 |
T |
|
| Q |
98 |
agcttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttgg |
197 |
Q |
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| T |
44235884 |
agcttgaagatgtaaacaaaggaatttcttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttgg |
44235983 |
T |
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| Q |
198 |
tggtcaaagcagctggatggctcttc |
223 |
Q |
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| T |
44235984 |
tggtcaaagcagctggatggctcttc |
44236009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 2884858 - 2884793
Alignment:
| Q |
100 |
cttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaa |
165 |
Q |
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| T |
2884858 |
cttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgagaagttagcctttaa |
2884793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 2899702 - 2899767
Alignment:
| Q |
100 |
cttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaa |
165 |
Q |
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| T |
2899702 |
cttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaa |
2899767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 2874971 - 2874874
Alignment:
| Q |
119 |
gaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatg |
216 |
Q |
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||||| |||||||| |||||| |||||||||||| |||||||||||| || ||| ||||||| | |||||||| ||| || || || || |||||||| |
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| T |
2874971 |
gaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatg |
2874874 |
T |
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