View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12440_low_3 (Length: 618)
Name: NF12440_low_3
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 3 - 618
Target Start/End: Original strand, 32061650 - 32062265
Alignment:
| Q |
3 |
agcagaacctgtggatgaactgcagaaatcttatgaacaatttcttcaacgcatgaagcgcaagaagaaaattcaggtattgactagttttttccttcat |
102 |
Q |
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| T |
32061650 |
agcagagcctgtggatgaactgcagaaatcttatgaacaatttcttcaacgcatgaagcgcaagaagaaaattcaggtattgactagttttttccttcat |
32061749 |
T |
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| Q |
103 |
gtgtccatctatgctgtttttgtcannnnnnngttattcttggtacttggtccattcagtgtagctagttttaataaaatgttatacaatatcaggaaat |
202 |
Q |
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| T |
32061750 |
gtgtccatctatgctgtttttgtcatttatttgttattcttggtacttggtccattcagtgtagctagttttaataaaatgttatacaatatcaggaaat |
32061849 |
T |
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| Q |
203 |
gaaagctgctgatagacgcgtaaaggctaaaaatgatgagagcaagaaacttcgcggtgatcatacagttgtaatcaacaagtttattgacactgccatg |
302 |
Q |
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| T |
32061850 |
gaaagctgctgatagacgcgtaaaggctaaaaatgatgagagcaagaaacttcgcggtgatcatacagttgtaatcaacaagtttgttgacactgccatg |
32061949 |
T |
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| Q |
303 |
gatggaaagtctgaagcagaaaatgcatgccatcatggactggtagatcctacaataaatatgaaggaggccatgaatgccattaacagcatgttcagtg |
402 |
Q |
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| T |
32061950 |
gatggaaagtctgaagcagaaaatgcatgccatcatggactggtagatcctacaataaatatgaaggaggccatgaatgccattaacagcatgttcagtg |
32062049 |
T |
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| Q |
403 |
agccattagagactgttcctttgggcaagaaattacataagaacaattcaaaagaaaatcgcagttcaacgaactttgaagtttttgttgatgaaaattt |
502 |
Q |
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| T |
32062050 |
agccattagagactgttcctttgggcaagaaattacataagaacaattcaaaagaaaattgcagttcaatgaactttgaagtttttgttgatgaaaattt |
32062149 |
T |
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| Q |
503 |
ggataaagaaaataaaccaagcggttccgcatcacttcagtacaggaatgaaggtggcaaacctcaacaagaatcactccagatacatattgatgatgaa |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062150 |
ggataaagaaaataaaccaagcggttccgcatcacttcagcacaggaatgaaggtggcaaacctcaacaagaatcactccagatacatattgatgatgaa |
32062249 |
T |
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| Q |
603 |
ggacgttcagaaggtt |
618 |
Q |
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|||| ||||||||||| |
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| T |
32062250 |
ggacattcagaaggtt |
32062265 |
T |
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