View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12440_low_5 (Length: 419)
Name: NF12440_low_5
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_low_5 |
 | |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 406
Target Start/End: Original strand, 15814557 - 15814960
Alignment:
| Q |
2 |
tcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaatatactctcattctatgtttatcattttt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||| | ||||||||||||||||||||| || |||||||| |||||||||||||| |
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|
| T |
15814557 |
tcaactgccatgtttcctcacctttaatatgaccacagaacatctcccatttacagccttcacctttgcaataaaccctcattctctgtttatcattttt |
15814656 |
T |
|
| Q |
102 |
tctaaactttaaatccctagcattctccacagcataagttcgaacagcatgttgaaaatcaatctttgtcataaataaagtaccaacctcccatttatac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15814657 |
cctaaactttaaatccctagcattctccacagaataagttctatcaacatgttgaaaatcaatctttgtcataaataaagtaccaacctcccatttatac |
15814756 |
T |
|
| Q |
202 |
tttttcatactaccaggcatcttgaaagttggaaatttgggattctgcactccatcttcatcactatctgaaccactatccagctcagagttatattctt |
301 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||| |||| || ||||||||||||||||| |||||| |||||||||||||||||||||| | |
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| T |
15814757 |
tctttcatactacatggcatcttgaaagttgggaatttggggttctatacaccatcttcatcactatcagaaccattatccagctcagagttatattcat |
15814856 |
T |
|
| Q |
302 |
ccacatcacttaatcccttgtcccccagaacacttgattgacccacttctccttcattgttaacagatctcctaagatgttcaattatgtcatcttcaaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
15814857 |
ccacatcacttaatcccttgtcccccacaacacttgattgacctac-tatccttcattgttaacaaatcttctaagatgttcaattatgtcatcttcaaa |
15814955 |
T |
|
| Q |
402 |
cacag |
406 |
Q |
| |
|
||||| |
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|
| T |
15814956 |
cacag |
15814960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 27654294 - 27653885
Alignment:
| Q |
1 |
ctcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaatatactctcattctatgtttatcatttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||| |||| |||| | ||| ||||| || |||||||||||| ||| |||||||| | ||||||| |
|
|
| T |
27654294 |
ctcaattgccacgtttcctcaccttcaattttaccacaatacatttcccattcacaaccatcacctttgcaagttaccctcattctcttcaagtcatttt |
27654195 |
T |
|
| Q |
101 |
ttctaaactttaaatccctagcattctccacagcataagttcgaacagcatgttgaaaatcaatctttgtcataaataaagtaccaacctcccatttata |
200 |
Q |
| |
|
|| ||||||| ||||| ||||||||||| |||||| |||||| ||||||| | |||||||||| ||| |||||||||||||| || |||||||||| ||| |
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|
| T |
27654194 |
ttttaaacttcaaatctctagcattctcaacagcaaaagttctaacagcaagctgaaaatcaaccttagtcataaataaagttcccacctcccattcata |
27654095 |
T |
|
| Q |
201 |
ctttttcatactaccaggcatcttgaaagttggaaatttgggatt--ctgcactccatcttcatcactatctgaaccactatccagctca---gagttat |
295 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||| ||||| ||||| ||| ||||||||| || || ||||| | |||||| ||||| | |
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|
| T |
27654094 |
ctttttcatactatttggcatcttaaaaactggaaattgtggatttcctgcat--cattttcatcactgtcagacccactcacaagctcatcagagttgt |
27653997 |
T |
|
| Q |
296 |
attcttccacatcacttaatcccttgtcccccagaacacttgattgacccacttctccttcattgttaacagatctcctaagatgttcaattatgtcatc |
395 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
27653996 |
attcttccagatcacttaatcccttgtcctccacaacatttgattggcctacttctccttcattgttaacagatctcctaaaatgttcaattatatcatc |
27653897 |
T |
|
| Q |
396 |
ttcaaacacagg |
407 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
27653896 |
ttcaaagacagg |
27653885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 212 - 413
Target Start/End: Original strand, 2039 - 2240
Alignment:
| Q |
212 |
taccaggcatcttgaaagttggaaatttgggattctgcactccatcttcatcactatctgaaccactatccagctcagagttatattcttccacatcact |
311 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2039 |
taccaggcatcttgaaagttgggaatttgaggttctgcactccatcttcatcactatctgaaccactatccagctcagagttatattcttccacatcact |
2138 |
T |
|
| Q |
312 |
taatcccttgtcccccagaacacttgattgacccacttctccttcattgttaacagatctcctaagatgttcaattatgtcatcttcaaacacaggttct |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2139 |
taatcccttgtcccccataacacttgattgacctacttctccttcattgttaacagatctcctaagatgttcaattatgtcatcttcaaacacagggtct |
2238 |
T |
|
| Q |
412 |
gc |
413 |
Q |
| |
|
|| |
|
|
| T |
2239 |
gc |
2240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1858 - 2043
Alignment:
| Q |
1 |
ctcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaatatactctcattctatgtttatcatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
1858 |
ctcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaataaaccctcattctatgtttatcatttt |
1957 |
T |
|
| Q |
101 |
ttctaaactttaaatccctagcattctccacagcataagttcgaacagcatgttgaaaatcaatctttgtcataaataaagtacca |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
1958 |
ttctaaactttaaatccctagcattctccacagcataagttctaacaacatgttgaaagtcaatctttgtcataaataaagtacca |
2043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 11385242 - 11384829
Alignment:
| Q |
1 |
ctcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaatatactctcattctatgtttatcatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| ||| ||||| |||||||| |||||| ||| | ||| ||||||||||| |
|
|
| T |
11385242 |
ctcaactgccatgtttcctcacctggaataggtgcacaatacatcttccattcacaaccttcacccttgcaaacaactacaactctccttttatcatttt |
11385143 |
T |
|
| Q |
101 |
ttctaaactttaaatccctagcattctccacagcataagttcgaacagcatgttgaaaatcaatctttgtcataaataaagtaccaacctcccatttata |
200 |
Q |
| |
|
|| | ||||| |||||| || |||||| |||||| || ||| |||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11385142 |
ttttgaacttcaaatccttacaattctcaacagcaaaacttctaacagcatcttgaaattcaacctttgtcataaataaagtacctacctcccatttata |
11385043 |
T |
|
| Q |
201 |
ctttttcatactaccaggcatcttgaaagttggaaatttgggattctgcactccatcttcatcactatctgaaccactatccagc---tcagagttatat |
297 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||| || || ||| ||||||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
11385042 |
gcctttcatactgactggcatcttgaaagttgggaatttagggttgcccacaccatcttcatcactatcagacccactatccagctcatcagagttatat |
11384943 |
T |
|
| Q |
298 |
tcttccacatcacttaatcccttgtcccccagaacacttgattgacccacttctccttcattgttaacagatctcctaagatgttcaattatgtcatctt |
397 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| || | ||| |||||||||||| |||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
11384942 |
tcttccacatcacttaatcccttctcccccacaacactagactcacctacttctccttcagtgttaacagatctcctaatagtctcaattatatcatctt |
11384843 |
T |
|
| Q |
398 |
caaacacaggttct |
411 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
11384842 |
caaacacatgttct |
11384829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 21794092 - 21794506
Alignment:
| Q |
1 |
ctcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaatatactctcattctatgtttatcatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| ||| ||||| |||||||| |||||| ||| | ||| ||||||||||| |
|
|
| T |
21794092 |
ctcaactgccatgtttcctcacctggaataggtgcacaatacatcttccattcacaaccttcacccttgcaaacaactacaactctccttttatcatttt |
21794191 |
T |
|
| Q |
101 |
ttcta-aactttaaatccctagcattctccacagcataagttcgaacagcatgttgaaaatcaatctttgtcataaataaagtaccaacctcccatttat |
199 |
Q |
| |
|
|| | ||||| |||||| || |||||| |||||| || ||| |||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21794192 |
tttttgaacttcaaatccttacaattctcaacagcaaaacttctaacagcatcttgaaattcaacctttgtcataaataaagtacctacctcccatttat |
21794291 |
T |
|
| Q |
200 |
actttttcatactaccaggcatcttgaaagttggaaatttgggattctgcactccatcttcatcactatctgaaccactatccagctca---gagttata |
296 |
Q |
| |
|
| ||||||||| | ||||||||||||||||| ||||| || || ||| ||||||||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
21794292 |
agcctttcatactgactggcatcttgaaagttgggaatttagggttgcccacaccatcttcatcactatcagacccactatccagctcatcagagttata |
21794391 |
T |
|
| Q |
297 |
ttcttccacatcacttaatcccttgtcccccagaacacttgattgacccacttctccttcattgttaacagatctcctaagatgttcaattatgtcatct |
396 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| || | ||| |||||||||||| |||||||||||||||||| | |||||||| |||||| |
|
|
| T |
21794392 |
ttcttccacatcacttaatcccttctcccccacaacactagactcacctacttctccttcagtgttaacagatctcctaatagtctcaattatatcatct |
21794491 |
T |
|
| Q |
397 |
tcaaacacaggttct |
411 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21794492 |
tcaaacacaggttct |
21794506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 7564679 - 7564923
Alignment:
| Q |
1 |
ctcaactgccatgtttcctcacctttaatattagcacagaacatctgccactcacagccttcacctttgcaatatactctcattctatgtttatcatttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||||||| |||||| ||| ||||| || | |||||||||| ||| |||||||| | | ||||||| |
|
|
| T |
7564679 |
ctcaattgccacgtttcctcaccttcaattttagcacaatacatctcccaatcacaaccattacctttgcaaattaccctcattctcttcatgtcatttt |
7564778 |
T |
|
| Q |
101 |
ttctaaactttaaatccctagcattctccacagcataagttcgaacagcatgttgaaaatcaatctttgtcataaataaagtaccaacctcccatttata |
200 |
Q |
| |
|
|| ||||||| ||||| ||||||||||| |||||| |||||| ||||||| | |||||||||| ||| |||||||||||||| || |||||||||| ||| |
|
|
| T |
7564779 |
ttttaaacttcaaatctctagcattctcaacagcaaaagttctaacagcaagctgaaaatcaaccttagtcataaataaagttcccacctcccattcata |
7564878 |
T |
|
| Q |
201 |
ctttttcatactaccaggcatcttgaaagttggaaatttgggatt |
245 |
Q |
| |
|
|||||||||||| | |||||||| ||| ||||||||| ||||| |
|
|
| T |
7564879 |
ctttttcatactgtctggcatcttaaaaactggaaattttggatt |
7564923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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