View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12440_low_6 (Length: 386)

Name: NF12440_low_6
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12440_low_6
NF12440_low_6
[»] chr4 (10 HSPs)
chr4 (1-370)||(39576394-39576763)
chr4 (3-284)||(39521751-39522032)
chr4 (3-327)||(39544544-39544862)
chr4 (3-370)||(39525248-39525615)
chr4 (3-123)||(39511505-39511625)
chr4 (3-94)||(39580925-39581016)
chr4 (159-231)||(39581090-39581162)
chr4 (282-333)||(39511781-39511832)
chr4 (197-284)||(39581842-39581929)
chr4 (268-334)||(39581202-39581265)
[»] chr7 (1 HSPs)
chr7 (53-119)||(3331422-3331488)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 39576394 - 39576763
Alignment:
Q  1 acggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacact 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576394 acggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacact 39576493  T
Q  101 gatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576494 gatgatggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgt 39576593  T
Q  201 cgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaagaagaaaagccagtaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39576594 cgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaattgaagaagaagaaaagccagtaa 39576693  T
Q  301 aatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaagctatg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576694 aatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaagctatg 39576763  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 39521751 - 39522032
Alignment:
Q  3 ggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactga 102  Q
    ||||||||||||| ||||||||| |||| |||||    ||||| ||||| || |  ||| |||||||||||||||||||||  ||||||||||||||||     
T  39521751 ggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactgg 39521850  T
Q  103 tgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgtcg 202  Q
    |||| || | ||| || ||||  | |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  39521851 tgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttcattcacgtcg 39521950  T
Q  203 atatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaa 284  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||||| || | |||||||||||||||||    
T  39521951 atatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaa 39522032  T

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Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 327
Target Start/End: Original strand, 39544544 - 39544862
Alignment:
Q  3 ggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactga 102  Q
    |||||| |||||| || ||||||||||||| |||||||||||| ||||| || || |||||||| || |||||||||||||| ||||||||| ||||||     
T  39544544 ggaaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaaacactgg 39544643  T
Q  103 tgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgtcg 202  Q
    |||| || | ||| || |||| ||| ||   |||||   | |||| ||||||| | |||||||||||||||||||||| || |||||||||||||||||     
T  39544644 tgattgacttgttactttggagcttttt---ctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcattcacgtca 39544740  T
Q  203 atatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaagaagaaaagccagtaaaa 302  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||  || || || | ||||| |||||   ||||||||||||| |||||||    
T  39544741 atatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaatt---gaagaagaaaagcaagtaaaa 39544837  T
Q  303 tgatagagtgttgaattgccattgg 327  Q
    |||||| |||||||| |||||||||    
T  39544838 tgatagtgtgttgaactgccattgg 39544862  T

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Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 370
Target Start/End: Original strand, 39525248 - 39525615
Alignment:
Q  3 ggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactga 102  Q
    ||||||||||||| || |||||||||||||||||    || |||||  | ||||| ||||| || || |||||||||||||| |||||||||| ||||||    
T  39525248 ggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaaggcactga 39525347  T
Q  103 tgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcac---- 198  Q
    |||| || ||||||||||||| ||| |   ||||||   | ||||||||||     |||||||||| ||||||||||  || ||| ||||| | ||        
T  39525348 tgattgactggtttctatggagctttt---gctgaaacttgttttagggtagttggggtttgattccccaatataaactttattactttcagtaacagta 39525444  T
Q  199 --gtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaagaagaaaagcca 296  Q
      || | |||||||||||||| ||||||||||| | ||||| | |||||||||||| |  |||||||  | |||||||||||||| |||||   |||| |    
T  39525445 acgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaataagaa---aagcaa 39525541  T
Q  297 gtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaagctatg 370  Q
    |||| ||||||||||||||||||||||| | |||||  |||| || |||||| |||||||||||||||||||||    
T  39525542 gtaagatgatagagtgttgaattgccatggagagagttgaaaattatgtttgtttgatgattttttaagctatg 39525615  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 39511505 - 39511625
Alignment:
Q  3 ggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactga 102  Q
    |||||||||||||||| ||||||||||| | |||    ||||||||  | ||||| ||| ||||||| ||||| |||||||| |||| |||||  |||||    
T  39511505 ggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaaggaactga 39511604  T
Q  103 tgatggattggtttctatgga 123  Q
    |||| |||| |||||||||||    
T  39511605 tgattgatttgtttctatgga 39511625  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 39580925 - 39581016
Alignment:
Q  3 ggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaa 94  Q
    ||||||||||||| ||||||||||||||||||||    ||||||||| | ||||  ||| |||| ||  ||||||||||||| |||||||||    
T  39580925 ggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaa 39581016  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 39581090 - 39581162
Alignment:
Q  159 ggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgt 231  Q
    |||||||||||||||||||||  || ||| ||||| | || || | ||||||||| |||||||||||||||||    
T  39581090 ggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgt 39581162  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 39511781 - 39511832
Alignment:
Q  282 gaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagaga 333  Q
    |||||||||||   |||||||||||||| |||||||||| ||||||||||||    
T  39511781 gaagaagaaaaattagtaaaatgatagactgttgaattgtcattgggagaga 39511832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 39581842 - 39581929
Alignment:
Q  197 acgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaa 284  Q
    |||| ||||||| |||||||| ||||||||||| | ||||| | ||||||||| ||||  | ||| || | |||||||||||||||||    
T  39581842 acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaagaa 39581929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 39581202 - 39581265
Alignment:
Q  268 tgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagag 334  Q
    |||||||||||||||   ||||||||  |||| || |||||| |||||||||||||| |||||||||    
T  39581202 tgatgagaattgaag---aagaaaagttagtagaacgatagactgttgaattgccatggggagagag 39581265  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 3331488 - 3331422
Alignment:
Q  53 gattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttcta 119  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||| || |||| |||||||    
T  3331488 gattcagaatggaaaattcttgctctttggtaaagaggtgaaggaactgattattgatttgtttcta 3331422  T

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