View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12440_low_9 (Length: 287)
Name: NF12440_low_9
Description: NF12440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12440_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 8773806 - 8773538
Alignment:
| Q |
5 |
cagaacctgtgttgtcaactcacctgcgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
104 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8773806 |
cagaacctgtgttgtcaactcacctacgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
8773707 |
T |
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| Q |
105 |
ttctggtgcaatacgtctcgaggacaaaaaatgtgtgggggattccatggtttatacattgcgaaaatatcgtgagaaaggcattgaaagagaggttgta |
204 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8773706 |
ttctggtgcaatacgtctcgaggaaaaaaaa-gtgtgggggattccttggtttatacattgcgaaaatatcgtgacaaaggcattgaaagagaggttgta |
8773608 |
T |
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| Q |
205 |
tacgatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattccatgatgtc |
274 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8773607 |
tacaatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattccatgttgtc |
8773538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 25517029 - 25517290
Alignment:
| Q |
5 |
cagaacctgtgttgtcaactcacctgcgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25517029 |
cagaacctgtgttgtcaactcacctgcgtttgattgagattgatactgccataatttacacagcagagatctttaaagaagttaaagatgaaattattga |
25517128 |
T |
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| Q |
105 |
ttctggtgcaatacgtctcgaggacaaaaaatgtgtgggggattccatggtttatacattgcgaaaatatcgtgagaaaggcattgaaagagaggttgta |
204 |
Q |
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| T |
25517129 |
tgctggtgcaatacgtctcgaggacaaaaaatgtgttggggattccattgtttatacattgcgaaaatatcgtgagaaaggcattgaaagagaggttgta |
25517228 |
T |
|
| Q |
205 |
tacgatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattcc |
266 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25517229 |
tatgatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcgtgtgggattcc |
25517290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 25518253 - 25517993
Alignment:
| Q |
5 |
cagaacctgtgttgtcaactcacctgcgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
104 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25518253 |
cagaacctgtgttgtcaacccacctgcgtttgattgagattgatgctgccaaaatttacacagcagagatctttaaagaagttaaagatgaaattattga |
25518154 |
T |
|
| Q |
105 |
ttctggtgcaatacgtctcgaggacaaaaaatgtgtgggggattccatggtttatacattgcgaaaatatcgtgagaaaggcattgaaagagaggttgta |
204 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25518153 |
tgctggtgcaatacgtctcgaggacaaaaaatgtgtgggggattccatggtttatacattgcgaaaatatcgtgag-aaggcattgaaagagaggttgta |
25518055 |
T |
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| Q |
205 |
tacgatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattcc |
266 |
Q |
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|| ||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
25518054 |
tatgatactgcaagtttagaatttaagtgttcgtgtagactatttgagtcatgtgggattcc |
25517993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 7556895 - 7557163
Alignment:
| Q |
5 |
cagaacctgtgttgtcaactcacctgcgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
104 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7556895 |
cagaacctgtgttgtcaactcacctacgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
7556994 |
T |
|
| Q |
105 |
ttctggtgcaatacgtctcgaggacaaaaaatgtgtgggggattccatggtttatacattgcgaaaatatcgtgagaaaggcattgaaagagaggttgta |
204 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7556995 |
ttctggtgcaatacgtctcgaggaaaaaaaa-gtgtgggggattccttggtttatacattgcgaaaatatcgtgacaaaggcattgaaagagaggttgta |
7557093 |
T |
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| Q |
205 |
tacgatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattccatgatgtc |
274 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7557094 |
tacaatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattccatgttgtc |
7557163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 19720248 - 19720517
Alignment:
| Q |
5 |
cagaacctgtgttgtcaactcacctgcgtttgattgagattgatgctgccagaatttacacggcagagatctttaaagaagttaaagatgaaattattga |
104 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
19720248 |
cagaacctgtgttgtcaactcacctgcgtttaattgagattgatgctgccagaatttacacagcagagatctttaaagaagttaaagataaaattattga |
19720347 |
T |
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| Q |
105 |
ttctggtgcaatacgtctcgaggacaaaaaatgtgtgggggattccatggtttatacattgcgaaaatatcgtgagaaaggcattgaaagagaggttgta |
204 |
Q |
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| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19720348 |
tgctggtgcaatacgtctcaaggacaaaaaatatgtgggggattccatggtttatacattgcaaaaatatcgtgagaaaggcattgaaagagaggttgta |
19720447 |
T |
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| Q |
205 |
tacgatgctgcaagtttagaatttcagtgttcgtgtagactatttgagtcacgtgggattccatgatgtc |
274 |
Q |
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||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
19720448 |
tacgatgttgaaagtttagaatttcagtgtttgtgtatactatttgagtcacgtgggattccatgttgtc |
19720517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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