View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_high_16 (Length: 218)
Name: NF12441_high_16
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 35672376 - 35672498
Alignment:
| Q |
1 |
aatgcacaaaagaagatattttctaagatttatcaaaggaaagtgaagctttacctattaaaatcaaaatgaacaagctgcatttcttgtgatatttcca |
100 |
Q |
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| T |
35672376 |
aatgcacaaaagaagatattttcttagatttatcaaaggaaagtgaagctttacctattaaaatcaaaatgaacaagctgcatttcttgtgatatttcca |
35672475 |
T |
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| Q |
101 |
cttgctgcaaaatgacaaaacaa |
123 |
Q |
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| T |
35672476 |
cttgctgcaaaatgacaaaacaa |
35672498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 38456398 - 38456430
Alignment:
| Q |
4 |
gcacaaaagaagatattttctaagatttatcaa |
36 |
Q |
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| T |
38456398 |
gcacaaaagaagatattttcttagatttatcaa |
38456430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 38456460 - 38456492
Alignment:
| Q |
4 |
gcacaaaagaagatattttctaagatttatcaa |
36 |
Q |
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| T |
38456460 |
gcacaaaagaagatattttcttagatttatcaa |
38456492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 29873909 - 29873840
Alignment:
| Q |
34 |
caaaggaaagtgaagctttacctattaaaatcaaaatgaacaagctgcatttcttgtgatatttccactt |
103 |
Q |
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| T |
29873909 |
caaaggaaagtgaagctttacctattaaaatcaaaatgaacaagctgcatgtcttctgatatttccactt |
29873840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 29868791 - 29868729
Alignment:
| Q |
41 |
aagtgaagctttacctattaaaatcaaaatgaacaagctgcatttcttgtgatatttccactt |
103 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
29868791 |
aagtgaagctttacctattgaaatcaaaatgaacaagctgcatgtcttctgatatttccactt |
29868729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 44576495 - 44576450
Alignment:
| Q |
44 |
tgaagctttacctattaaaatcaaaatgaacaagctgcatttcttg |
89 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
44576495 |
tgaagctttaccgattgaaatcaaaatgaacaagctgcatgtcttg |
44576450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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