View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_high_4 (Length: 425)
Name: NF12441_high_4
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 2189266 - 2188858
Alignment:
| Q |
1 |
gatgaagtcagcaatagttgagagagaactcggaaacgttgaagaggaaaggagaatgttaaatgaaggattgaagcaattcccttcgttttataaattg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2189266 |
gatgaagtcagctatagttgagagagaactcggaaacgttgaagaggaaaggagaatgttaaatgaaggattgaagcaattcccttcgttttataaattg |
2189167 |
T |
|
| Q |
101 |
tggttgatgcttggccagcttgaggaacggcttgctaagactgcaaagcgacaagatcagcctgagaagtggcattctcacatgataacagccaagaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
2189166 |
tggttgatgcttggccagcttgaggaacggcttgctaagactacaaagcgacaagatcagcctgagaagcggcattctcacatgatgacagccaagaagg |
2189067 |
T |
|
| Q |
201 |
tctatgaatctggacagaaaaagtgtcctaattctgtgccgcttttgctctctcttgctaatcttgaagaggagatgaatgggctgagtaaagttcgttt |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2189066 |
tctatgaatctggacagaaaaactgtcctaattctgtgccgctttggctctctcttgctaatcttgaagaggagatgaatgggctgagtaaagttcgtgt |
2188967 |
T |
|
| Q |
301 |
aattttcacaatggctcgcaagaagaatcctcaaaaccccgaactctggctagcagctattagagcagaattaaagcatggatacaagaaagaagctgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2188966 |
aattttcacaatggctcgcaagaagaatcctcaaaaccccgaactctggctagcagctattagagcagaattaaagcatggatacaagaaagaagctgat |
2188867 |
T |
|
| Q |
401 |
acgttgatg |
409 |
Q |
| |
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| T |
2188866 |
acgttgatg |
2188858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 25164885 - 25164485
Alignment:
| Q |
1 |
gatgaagtcagcaatagttgagagagaactcggaaacgttgaagaggaaaggagaatgttaaatgaaggattgaagcaattcccttcgttttataaattg |
100 |
Q |
| |
|
|||||| ||||| || || |||||||||||||||||| ||||||||||||||| | || ||||||||||| | |||||||||||||| || | ||||||| |
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| T |
25164885 |
gatgaaatcagctattgtagagagagaactcggaaacattgaagaggaaaggaaattgctaaatgaaggacttaagcaattcccttcattctttaaattg |
25164786 |
T |
|
| Q |
101 |
tggttgatgcttggccagcttgaggaacggcttgctaagactgcaaagcgacaagatcagcctgagaagtggcattctcacatgataacagccaagaagg |
200 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| || ||||||||| || |||||| |||||||| ||||||||||| ||| ||| ||||||| |
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| T |
25164785 |
tggttgatgcttggccagcttgaggaacgtcttgctgaggctgcaaagcagcaggatcagactgagaagcagcattctcacaagatggaagctaagaagg |
25164686 |
T |
|
| Q |
201 |
tctatgaatctggacagaaaaagtgtcctaattctgtgccgcttttgctctctcttgctaatcttgaagaggagatgaatgggctgagtaaagttcgttt |
300 |
Q |
| |
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||||||| ||||||| ||||| |||||||||||||| || |||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
25164685 |
tctatgattctggactgaaaagttgtcctaattctgtacccctttggctctctcttgctaatctcgaagaggagatgagtgggctgagtaaagctcgtgc |
25164586 |
T |
|
| Q |
301 |
aattttcacaatggctcgcaagaagaatcctcaaaaccccgaactctggctagcagctattagagcagaattaaagcatggatacaagaaagaagctgat |
400 |
Q |
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| | ||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
25164585 |
agctctcacaatggctcgaaagaggaatcctcaaaaccctgaactctggctagcagctgttagagcagaattaaagcatggttataagaaagaagctgat |
25164486 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
|
| |
|
|
| T |
25164485 |
a |
25164485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 63 - 400
Target Start/End: Complemental strand, 5816402 - 5816062
Alignment:
| Q |
63 |
atgaaggattgaagcaattcccttcgttttataaattgtggttgatgcttggccagcttgaggaacggcttgctaagactgcaaagcgacaagatcagcc |
162 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||| || | ||||||| ||| || ||||| |
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| T |
5816402 |
atgaaggattgaagcaattcccatcattttataaattatggttgatgcttggccagcttgaggaagggcttgctgaggcggcaaagcaacaggaccagcc |
5816303 |
T |
|
| Q |
163 |
tgagaagtggcattctcacatgataacagccaagaaggtctatgaatctggacagaaaaagtgtcctaattctgtgccgcttttgctctctcttgctaat |
262 |
Q |
| |
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||||||| ||||| ||||| |||| ||| ||||| || ||| | || |||| ||||| | |||||||||||| || |||| ||| |||||||||||| |
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| T |
5816302 |
tgagaagcggcatgctcacttgatggaagctaagaacgtttataattcaggactgaaaagatttcctaattctgtacctctttggctatctcttgctaat |
5816203 |
T |
|
| Q |
263 |
cttgaagaggagatga---atgggctgagtaaagttcgtttaattttcacaatggctcgcaagaagaatcctcaaaaccccgaactctggctagcagcta |
359 |
Q |
| |
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||||||||||||||| ||| | | |||||||||||| || ||||||| ||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
5816202 |
attgaagaggagatgagtgatgagttcagtaaagttcgtgctgttctcacaattgctcgaaagaagaatcctcaaaatcctgaactctggctagcagctg |
5816103 |
T |
|
| Q |
360 |
ttagagcagaattaaagcatggatacaagaaagaagctgat |
400 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||| |
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|
| T |
5816102 |
ttagagcggaattaaggcatggatgtaagaaagaagctgat |
5816062 |
T |
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