View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12441_high_5 (Length: 415)
Name: NF12441_high_5
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_high_5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 25011136 - 25010727
Alignment:
| Q |
1 |
catgatcatacacagtctgcaattagaaagaaaataatcaaccaatgagcaatccgataccatgaatgtacgaaattgatcataggttataatcctatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25011136 |
catgatcatacacagtctgcaattagaaagaaaataatcaaccaatgagcaatccgataccatgaatgtacgaaattgat---aggttataatcctatac |
25011040 |
T |
|
| Q |
101 |
acttctgatgtaaatatttcttacactgtcaatcagttacaaccttcggataattacgaatagttgacttaatcataattacttctaaagtcacacatgt |
200 |
Q |
| |
|
||||| | |||||| |||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
25011039 |
acttccggtgtaaagattttttacactgtcaatcagttacaaccgtcggataattacaaatatttgacttaatcagaattacttctaaagtcacacatac |
25010940 |
T |
|
| Q |
201 |
gttatgatttgttaacagtgtaaacatttgacactggcagttgttaaactcaaattgatatatcagaacatctcagatnnnnnnnnnnnnngggttccct |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25010939 |
gttgtgatttgttaacagtgtaaacatttgacactggcagttattaaactcaaattgatatatcagaacatctcagat--aaaaaaaaaatgggttccct |
25010842 |
T |
|
| Q |
301 |
tggagtactattaaagaaacaatggttaaaatatataacgaaaggtaaaatatttatgatactgaaaagaaatcagattatacaatagttacttttataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25010841 |
tggagtactattaaagaaacaatggttaaaatatataaccaaaggtaaaatatttatgatattgaaaagaaatcagattatacaatagttacttttataa |
25010742 |
T |
|
| Q |
401 |
tcaaaaacatttaat |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25010741 |
tcaaaaacatttaat |
25010727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 35169998 - 35170056
Alignment:
| Q |
169 |
ttaatcataattacttctaaagtcacacatg---tgttatgatttgttaacagtgtaaa |
224 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
35169998 |
ttaatcataactacttctaaagtcacacatgattggttatgatttgttgacagtgtaaa |
35170056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University