View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_10 (Length: 388)
Name: NF12441_low_10
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 2223676 - 2224037
Alignment:
| Q |
18 |
acatcaattcctggaaaacattgtggtttgaatgacacaaaccaaacatttcatcataataaatcatctctcgcatgaaaattccatcaattataatttc |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223676 |
acatcaattcctggaaaacattgcagtttgaatgacacaaaccaaacatttcatcataataaatcatctctcgcatgaaaattccatcaattataatttc |
2223775 |
T |
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| Q |
118 |
aatgtgtttggcctgtattctaaggaagttccaatttgtcagacaagtcaaaaagtgaaaatgatgtaatagcattgatgctnnnnnnngtaaacaaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2223776 |
aatgtgtttggcctgtattctaaggaagttccaatttgtcagacaagtcaaaaagtgaaaatgatgtaatagcattgatgctaaaaaaagtaaacaaata |
2223875 |
T |
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| Q |
218 |
gctgtaagaatttacagaagcggagtaccttcctagtgttggcatgttgatacacacaagtctaggccgaatacaattataccagttggtgcaaagaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223876 |
gctgtaagaatttacagaagcggagtaccttcctagtgttggcatgttgatacacacaagtctaggccgaatacaattataccagttggtgcaaagaaaa |
2223975 |
T |
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| Q |
318 |
gtagttcaatcagaaaagtattatttttagtcatttgtcttttctcaaaagcacaggttctg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223976 |
gtagttcaatcagaaaagtattatttttagtcatttgtcttttctcaaaagcacaggttctg |
2224037 |
T |
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