View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12441_low_13 (Length: 316)

Name: NF12441_low_13
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12441_low_13
NF12441_low_13
[»] chr1 (1 HSPs)
chr1 (17-307)||(41561308-41561598)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 41561308 - 41561598
Alignment:
Q  17 acatcaggttcacgatatttggcttgaaaatatgcgaaataaatggccaaactgtaagcacgaggaaatttaagtacagattgaaaagcaaaagtagtgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41561308 acatcaggttcacgatatttggcttgaaaatatgcgaaataaatggccaaactgtaagcacgaggaaatttaagtacagattgaaaagcaaaagtagtgt 41561407  T
Q  117 ttatggtaagctatatattcccgttgtcatttggatcaaggaagctgaaatgcggccatgttattgtcagagttgagagcagctataattccgtggctat 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  41561408 ttatggtaagctatatattcccattgtcatttggatcaaggaagttgaaatgctgccatgttattgtcagagttgagagcagctataatttcgtggctat 41561507  T
Q  217 tgttgagttattcttttaagttttggtctctgtctatagttgataaaattatccagtgttagattttatatttgtttgaacacaggttctg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41561508 tgttgagttattcttttaagttttggtctctgtctatagttgataaaattattcagtgttagattttatatttgtttgaacacaggttctg 41561598  T

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