View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_14 (Length: 297)
Name: NF12441_low_14
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 3951420 - 3951154
Alignment:
| Q |
14 |
tgtgacgaagttttcaagtcccaattcttgactttaaggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtt |
113 |
Q |
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| T |
3951420 |
tgtgacgaagttttcaagtcccaattcttgactttaaggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtt |
3951321 |
T |
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| Q |
114 |
tctgcataaaagtgtgcaggacattgtatatatg---gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
210 |
Q |
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| T |
3951320 |
tctgcataaaagtgtgcaggacattatatatatggaagaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaact |
3951221 |
T |
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| Q |
211 |
gaaaactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaa |
277 |
Q |
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| T |
3951220 |
gaaaactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaa |
3951154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 4027464 - 4027646
Alignment:
| Q |
24 |
ttttcaagtcccaattcttgactttaaggaacaaaatga--gtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
121 |
Q |
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| T |
4027464 |
ttttcaagtcccaattcttgacattaaggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacata |
4027562 |
T |
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| Q |
122 |
aaagtgtgcaggacattgtatatatggaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatataga |
207 |
Q |
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| T |
4027563 |
a--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatataga |
4027646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
148 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
210 |
Q |
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|||||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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