View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_16 (Length: 272)
Name: NF12441_low_16
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 41390184 - 41390442
Alignment:
| Q |
1 |
gtatgtaattgagaaccatggtagaatccaatttagaaaatttaatttaattaagagaatgattgattatttgaaattgatagaaattctaaaagtttat |
100 |
Q |
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| T |
41390184 |
gtatgtaattgagaaccatggtagaatccaatttagaaaatttaatttaattaagagaatgattgattatttgaaattgatagaaattctaaaagtttat |
41390283 |
T |
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| Q |
101 |
tgcaatatgatatactatattgcaacaatacctaaacgaacaaattcattagtataacaagtgtacttaatcgttacaagtaataattcgtagattgggg |
200 |
Q |
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| T |
41390284 |
tgcaatatgatatactatatcgcaacaatacctaaacgaacaaattcattagtataacaagtgtaattaatcgttacaagtaataattcgtagattgggg |
41390383 |
T |
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| Q |
201 |
gtgtactgaatccttacaagtaataattattggtagaatggttttaacaaactctaact |
259 |
Q |
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| T |
41390384 |
gtgtactgaatccttacaagtaataattattggtagaatggttttaacaaactctaact |
41390442 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 45518849 - 45518885
Alignment:
| Q |
49 |
aattaagagaatgattgattatttgaaattgatagaa |
85 |
Q |
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| T |
45518849 |
aattgagagaaagattgattatttgaaattgatagaa |
45518885 |
T |
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