View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12441_low_17 (Length: 267)

Name: NF12441_low_17
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12441_low_17
NF12441_low_17
[»] chr8 (5 HSPs)
chr8 (1-260)||(14354685-14354942)
chr8 (1-251)||(8173100-8173341)
chr8 (137-228)||(8172553-8172642)
chr8 (1-47)||(14354961-14355007)
chr8 (133-181)||(30011754-30011802)
[»] chr7 (2 HSPs)
chr7 (134-196)||(24547715-24547777)
chr7 (154-195)||(36853096-36853137)
[»] chr5 (3 HSPs)
chr5 (154-195)||(35035600-35035641)
chr5 (154-194)||(16230760-16230800)
chr5 (154-182)||(35056854-35056882)
[»] chr1 (1 HSPs)
chr1 (135-181)||(49538095-49538141)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 14354942 - 14354685
Alignment:
Q  1 ttttcagaaataactaccaaatactcaatttttattagacctcactataattacaccgacagtgcatgtgccctattctcaacttctaatcctacattgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14354942 ttttcagaaataactaccaaatactcaatttttattagacctcactataattacaccgacagtgcatgtgccctattctcaacttctaatcctacattgc 14354843  T
Q  101 aatacttaaaatatatgtgaatcgtcacataataaaaatgttcgacctcaagaataactacttctaaaatcacacatatgaattgttgtgatttatagac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14354842 aatacttaaaatatatgtgaatcgtcacataataaaaatgttcgacctcaagaagaactacttctaaaatcacacatatgaattgttgtgatttatagac 14354743  T
Q  201 tctgtaatttctattttacattttacactgaaagtgtatcaacatcaaacacaggttctg 260  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14354742 tc--taatttctattttacattttacactgaaagtgtatcaacatcaaacacagggtctg 14354685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 8173341 - 8173100
Alignment:
Q  1 ttttcagaaataactaccaaatactcaatttttattagacctcactataattacaccgacagtgcatgtgccc--tattctcaacttctaatcctacatt 98  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||  |||||||||||||||||||||||||    
T  8173341 tttttagaaataactaccaaatactcaatttttattagacctcgctataattacactgacagtgcatgtcccccctattctcaacttctaatcctacatt 8173242  T
Q  99 gcaatacttaaaatatatgtgaatcgtcacataataaaaatgttcgacctcaagaataactacttctaaaatcacacatatgaattgttgtgatttatag 198  Q
    || |||         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  8173241 gctata---------tatgtgaatcgtcacataataaaaatgttcgacctcaacaataactacttctaaaatcacacatatgatttgttgtgatttatag 8173151  T
Q  199 actctgtaatttctattttacattttacactgaaagtgtatcaacatcaaaca 251  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  8173150 actctgtaatt--tattttacattttacactgaaagtgtatcaacattaaaca 8173100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 8172553 - 8172642
Alignment:
Q  137 aatgttcgacctcaagaataactacttctaaaatcacacatatgaattgttgtgatttatagactctgtaatttctattttacattttacac 228  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  8172553 aatgttcgacctcaacaataactacttctaaaatcacacatatgatttgttgtgatttatagactctgtaatt--tattttacattttacac 8172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14355007 - 14354961
Alignment:
Q  1 ttttcagaaataactaccaaatactcaatttttattagacctcacta 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14355007 ttttcagaaataactaccaaatactcaatttttattagacctcacta 14354961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 30011802 - 30011754
Alignment:
Q  133 taaaaatgttcgacctcaagaataactacttctaaaatcacacatatga 181  Q
    |||||||||| ||| ||||  ||||||||||||||||||||||||||||    
T  30011802 taaaaatgtttgacttcaatcataactacttctaaaatcacacatatga 30011754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 24547777 - 24547715
Alignment:
Q  134 aaaaatgttcgacctcaagaataactacttctaaaatcacacatatgaattgttgtgatttat 196  Q
    ||||||||| ||| ||||  ||||||||||||||||||||| |||||| | ||||||||||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttat 24547715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 36853137 - 36853096
Alignment:
Q  154 ataactacttctaaaatcacacatatgaattgttgtgattta 195  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  36853137 ataactacttctaaagtcacacatatgattggttgtgattta 36853096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 35035600 - 35035641
Alignment:
Q  154 ataactacttctaaaatcacacatatgaattgttgtgattta 195  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  35035600 ataactacttctaaaatcacacatatgattggttgtgattta 35035641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 16230800 - 16230760
Alignment:
Q  154 ataactacttctaaaatcacacatatgaattgttgtgattt 194  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  16230800 ataactacttctaaaatcaaacatatgattggttgtgattt 16230760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 35056854 - 35056882
Alignment:
Q  154 ataactacttctaaaatcacacatatgaa 182  Q
    |||||||||||||||||||||||||||||    
T  35056854 ataactacttctaaaatcacacatatgaa 35056882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 49538141 - 49538095
Alignment:
Q  135 aaaatgttcgacctcaagaataactacttctaaaatcacacatatga 181  Q
    |||| ||||||| |||| |||||||||||||||||||||| ||||||    
T  49538141 aaaacgttcgacttcaataataactacttctaaaatcacatatatga 49538095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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