View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12441_low_19 (Length: 251)
Name: NF12441_low_19
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_19 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 16987419 - 16987196
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaa |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16987419 |
tgtggaaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaacgtgaaactgacgaacatcaa |
16987320 |
T |
|
| Q |
115 |
tggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaa |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||| |
|
|
| T |
16987319 |
tggatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattgtcactaa |
16987220 |
T |
|
| Q |
215 |
ggccatgttttaccttctgtgctg |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16987219 |
ggccatgttttaccttctgtgctg |
16987196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16787946 - 16787709
Alignment:
| Q |
1 |
gaacgagcagaacctgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaa |
100 |
Q |
| |
|
||||| ||||| | ||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || | || |
|
|
| T |
16787946 |
gaacgtgcagagcttgtggaaataggcaagaagttagtgagaaaatgtgtgggttcaactcttgctgctaaagtattgggaagcagtttgcgatttacaa |
16787847 |
T |
|
| Q |
101 |
ctgacgaacatcaatggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16787846 |
gcgacgaacatcaatggatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaactt |
16787747 |
T |
|
| Q |
201 |
gaaattgttattaaggccatgttttaccttctgtgctg |
238 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||| |
|
|
| T |
16787746 |
gaaattgtccttgaggccatgttttaccttctgcgctg |
16787709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 16797134 - 16796911
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaa |
114 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| |
|
|
| T |
16797134 |
tgtggcaataggcaagaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcagtttgcgctttacaagcgacgaacatcaa |
16797035 |
T |
|
| Q |
115 |
tggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaa |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||| | |
|
|
| T |
16797034 |
tggatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattgtcattga |
16796935 |
T |
|
| Q |
215 |
ggccatgttttaccttctgtgctg |
238 |
Q |
| |
|
||||||||||||| ||||| |||| |
|
|
| T |
16796934 |
ggccatgttttactttctgcgctg |
16796911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 16657961 - 16657754
Alignment:
| Q |
31 |
aagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggatttctgtactgg |
130 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| | | | ||| || |||||||||||||||||||| ||| |
|
|
| T |
16657961 |
aagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttacgctttaaaagcgatgaacatcaatggatttctgtggtgg |
16657862 |
T |
|
| Q |
131 |
aaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggccatgttttacctt |
230 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | | | ||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| || |
|
|
| T |
16657861 |
aaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttacttt |
16657762 |
T |
|
| Q |
231 |
ctgtgctg |
238 |
Q |
| |
|
||||||| |
|
|
| T |
16657761 |
ttgtgctg |
16657754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 17069455 - 17069251
Alignment:
| Q |
31 |
aagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggatttctgtactgg |
130 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | | ||| || |||||||||||||||||||| ||| |
|
|
| T |
17069455 |
aagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtgg |
17069356 |
T |
|
| Q |
131 |
aaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggccatgttttacctt |
230 |
Q |
| |
|
|||||||||||||||||||| || || | ||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| || |
|
|
| T |
17069355 |
aaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattgtcattgaggccatgttttacttt |
17069256 |
T |
|
| Q |
231 |
ctgtg |
235 |
Q |
| |
|
||||| |
|
|
| T |
17069255 |
ctgtg |
17069251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 16868212 - 16868419
Alignment:
| Q |
31 |
aagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggatttctgtactgg |
130 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | | ||| || ||||||||||||| |||||| ||| |
|
|
| T |
16868212 |
aagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtgg |
16868311 |
T |
|
| Q |
131 |
aaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggccatgttttacctt |
230 |
Q |
| |
|
|||||||||||||||||||| | || ||| | | | ||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| || |
|
|
| T |
16868312 |
aaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttacttt |
16868411 |
T |
|
| Q |
231 |
ctgtgctg |
238 |
Q |
| |
|
||||||| |
|
|
| T |
16868412 |
ttgtgctg |
16868419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 16781060 - 16780841
Alignment:
| Q |
19 |
gcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatgga |
118 |
Q |
| |
|
|||||||| ||| || | |||| ||||| |||||||||||| |||||||| || || ||||||||| ||||| | | ||| ||| |||||||||||| |
|
|
| T |
16781060 |
gcaataggcaaggagatagtgataaaatgtgtgggttcaccacttgctgccaaggttttgggaagccttttgcgctttaaaaatgaggaacatcaatggc |
16780961 |
T |
|
| Q |
119 |
tttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggcc |
218 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||| |||||||| | |||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |
|
|
| T |
16780960 |
tttctgtaaaggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttgtccttaaggcc |
16780861 |
T |
|
| Q |
219 |
atgttttaccttctgtgctg |
238 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
16780860 |
gtgttttactttttgtgctg |
16780841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 18806381 - 18806583
Alignment:
| Q |
4 |
cgagcagaacctgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactg |
103 |
Q |
| |
|
|||||||| | |||||||||||| ||| |||| |||||||||| |||||||||||||||||| || |||||| | |||||| ||||| | | |||||| |
|
|
| T |
18806381 |
cgagcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggttcacctcttgccgcaaaagtactaggaagccttttgcgctttaaaactg |
18806480 |
T |
|
| Q |
104 |
acgaacatcaatggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaa |
203 |
Q |
| |
|
| |||||||||||| |||||||| ||||||| ||||||||| ||| | ||||| ||||||||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
18806481 |
aggaacatcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaa |
18806580 |
T |
|
| Q |
204 |
att |
206 |
Q |
| |
|
||| |
|
|
| T |
18806581 |
att |
18806583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 18873386 - 18873577
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaa |
114 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| ||||||||| |||||||| || |||||| | |||||| ||||| | | ||||||| ||||||||| |
|
|
| T |
18873386 |
tgtggcaataggcaaggagttagtgagaaaatgtgtgggttctcctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaa |
18873485 |
T |
|
| Q |
115 |
tggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaatt |
206 |
Q |
| |
|
||| |||||||| ||||||| ||||||||| ||| | ||||| ||||||||||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
18873486 |
tggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgtattgagactcagctactttaatttgaaatt |
18873577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 16837629 - 16837525
Alignment:
| Q |
31 |
aagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggatttctgtactgg |
130 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | | ||| || |||||||||||||||||||| ||| |
|
|
| T |
16837629 |
aagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtgg |
16837530 |
T |
|
| Q |
131 |
aaagt |
135 |
Q |
| |
|
||||| |
|
|
| T |
16837529 |
aaagt |
16837525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 16843763 - 16843628
Alignment:
| Q |
20 |
caataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggat |
119 |
Q |
| |
|
||||||||||| || | || ||||||| ||||||||| ||||||||||| |||||| | |||||| | ||| | | ||||||| ||| ||||||| | |
|
|
| T |
16843763 |
caataggtaaggagatagttagaaaatgtgtgggttcgcctcttgctgccaaagtactaggaagccttctgcggtttaaaactgaggaatgtcaatggct |
16843664 |
T |
|
| Q |
120 |
ttctgtactggaaagtgagttttggaatttacctga |
155 |
Q |
| |
|
|||| || |||||||||| ||||||||||| |||| |
|
|
| T |
16843663 |
ttctataaaggaaagtgagatttggaatttatctga |
16843628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 12814 - 12591
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaa |
114 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| | | || ||||||||||||| |
|
|
| T |
12814 |
tgtggcaataggcaaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattaggaagcagtttgtgctttacaagtgacgaacatcaa |
12715 |
T |
|
| Q |
115 |
tggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaa |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||| | |
|
|
| T |
12714 |
tggatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattgtcattga |
12615 |
T |
|
| Q |
215 |
ggccatgttttaccttctgtgctg |
238 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
12614 |
ggccatgttttactttctgtgctg |
12591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 8472 - 8249
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaa |
114 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||| |
|
|
| T |
8472 |
tgtggcaataggcaaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggtagcagtttgtgctgtacaagcaacgaacatcaa |
8373 |
T |
|
| Q |
115 |
tggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaa |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||| ||| | |
|
|
| T |
8372 |
tggatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattgtcattga |
8273 |
T |
|
| Q |
215 |
ggccatgttttaccttctgtgctg |
238 |
Q |
| |
|
| ||||||||| | |||||||||| |
|
|
| T |
8272 |
gaccatgttttgctttctgtgctg |
8249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 18016 - 17808
Alignment:
| Q |
19 |
gcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatgga |
118 |
Q |
| |
|
|||||||||||| || | |||||||||| |||||||||||||||||||| || || ||||||||| | ||| | | ||| ||| |||||||||||| |
|
|
| T |
18016 |
gcaataggtaaggagatagtgagaaaatgcgtgggttcacctcttgctgccaaggttttgggaagccttctgcgctttaaaagtgaggaacatcaatggc |
17917 |
T |
|
| Q |
119 |
tttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggcc |
218 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| | ||||| |||||||||||||||||||||||||| || ||||||| || || ||||| |
|
|
| T |
17916 |
tttctgtaaaggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcgtccttgaggcc |
17817 |
T |
|
| Q |
219 |
atgttttac |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
17816 |
ctgttttac |
17808 |
T |
|
Back To:
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Target: scaffold0144 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 37439 - 37232
Alignment:
| Q |
31 |
aagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggatttctgtactgg |
130 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | | ||| || |||||||||||||||||||| ||| |
|
|
| T |
37439 |
aagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtgg |
37340 |
T |
|
| Q |
131 |
aaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggccatgttttacctt |
230 |
Q |
| |
|
|||||||||||||||||||| |||| ||| | | ||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| || |
|
|
| T |
37339 |
aaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattgtcattgaggccatgttttacttt |
37240 |
T |
|
| Q |
231 |
ctgtgctg |
238 |
Q |
| |
|
||||||| |
|
|
| T |
37239 |
ttgtgctg |
37232 |
T |
|
Back To:
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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 38939559 - 38939766
Alignment:
| Q |
19 |
gcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatgga |
118 |
Q |
| |
|
|||||||| ||| || | |||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| | | ||| ||| |||||||||||| |
|
|
| T |
38939559 |
gcaataggcaaggagatagtgagaaaatgtgtgggttcacctcttgctgccaaagtattgggaagccttttgcgctttaaaagtgaggaacatcaatggt |
38939658 |
T |
|
| Q |
119 |
tttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggcc |
218 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||| || |||||||||| || ||||| |
|
|
| T |
38939659 |
tttctgtaaaggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgaggcc |
38939758 |
T |
|
| Q |
219 |
atgtttta |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
38939759 |
atgtttta |
38939766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 7053467 - 7053685
Alignment:
| Q |
20 |
caataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggat |
119 |
Q |
| |
|
||||||| ||| || | |||||||||| |||||||||||||||||| || |||||||| |||||| ||| | || | || ||| ||||||||||| | |
|
|
| T |
7053467 |
caataggcaaggagatagtgagaaaatgtgtgggttcacctcttgcagcaaaagtattaggaagccttttacgatttaaacgtgagaaacatcaatggct |
7053566 |
T |
|
| Q |
120 |
ttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggcca |
219 |
Q |
| |
|
|||| || |||||| |||||||||||||| |||||||| |||| ||||||||||||||||| || ||||||| || ||||||||| ||| ||||| |
|
|
| T |
7053567 |
ttctataaaggaaagcaagttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattgccattgaggcct |
7053666 |
T |
|
| Q |
220 |
tgttttaccttctgtgctg |
238 |
Q |
| |
|
|||||| | || ||||||| |
|
|
| T |
7053667 |
tgtttttctttttgtgctg |
7053685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 9111 - 8893
Alignment:
| Q |
20 |
caataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatggat |
119 |
Q |
| |
|
||||||| ||| || | |||||||||| ||||||||||||||||||||| |||||||||||||| |||| | | ||| ||| |||||||||||| | |
|
|
| T |
9111 |
caataggcaaggagattgtgagaaaatgtgtgggttcacctcttgctgccaaagtattgggaagtcttttgtgctttaaaagtgaggaacatcaatggct |
9012 |
T |
|
| Q |
120 |
ttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggcca |
219 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || || ||| |
|
|
| T |
9011 |
ctctgtcaaggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagacca |
8912 |
T |
|
| Q |
220 |
tgttttaccttctgtgctg |
238 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
8911 |
tgttttactttttgtgctg |
8893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 13378052 - 13377833
Alignment:
| Q |
19 |
gcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaatgga |
118 |
Q |
| |
|
|||||||| ||| || | |||||||||| ||||||||||||||||||||| || || ||||||||| || || | | ||| ||| |||||||||||| |
|
|
| T |
13378052 |
gcaataggcaaggagatagtgagaaaatgtgtgggttcacctcttgctgccaaggttttgggaagcctttcgcgctttaaaagtgaggaacatcaatggc |
13377953 |
T |
|
| Q |
119 |
tttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggcc |
218 |
Q |
| |
|
|||||||| ||||||| || ||||||||||| |||||||| | |||||||||||||||||||||||||||||||| || |||||||||| || ||||| |
|
|
| T |
13377952 |
tttctgtaaaggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgaggcc |
13377853 |
T |
|
| Q |
219 |
atgttttaccttctgtgctg |
238 |
Q |
| |
|
||||||||| || ||||||| |
|
|
| T |
13377852 |
atgttttactttttgtgctg |
13377833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 9318 - 9097
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaatgtgaaactgacgaacatcaa |
114 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| ||||||||| |||||||| || |||||| | ||||| ||||| | | ||| ||| ||||||||| |
|
|
| T |
9318 |
tgtggcaataggcaaggagttagtgagaaaatgtgtgggttcgcctcttgccgccaaagtactaggaagtcttttgcgctttaaaagtgaggaacatcaa |
9219 |
T |
|
| Q |
115 |
tggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaa |
214 |
Q |
| |
|
||| |||||||| ||| ||| ||||||||| ||| | ||||| ||||||||||||||| ||||||||| |||||||| || |||||||| | | | | |
|
|
| T |
9218 |
tggctttctgtaaaggacagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattatcactga |
9119 |
T |
|
| Q |
215 |
ggccatgttttaccttctgtgc |
236 |
Q |
| |
|
|||| |||||||| || ||||| |
|
|
| T |
9118 |
ggccgtgttttactttttgtgc |
9097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 4638 - 4416
Alignment:
| Q |
15 |
tgtggcaataggtaagaagttggtgagaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagttt-gcaatgtgaaactgacgaacatca |
113 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| ||||||||| ||||||||||| |||||| | |||||| ||| || | | ||| ||| |||||||| |
|
|
| T |
4638 |
tgtggcaataggcaaggagttagtgagaaaatgtgtgggttcgcctcttgctgccaaagtactaggaagcctttttgcgctttaaaagtgaggaacatca |
4539 |
T |
|
| Q |
114 |
atggatttctgtactggaaagtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttatta |
213 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| ||| | ||||| |||||||||||| || ||||||||| |||||||| || || ||||| | | | |
|
|
| T |
4538 |
atggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtttgttttgagactcagctactttaatttaaaattatcactg |
4439 |
T |
|
| Q |
214 |
aggccatgttttaccttctgtgc |
236 |
Q |
| |
|
||||| |||||||| || ||||| |
|
|
| T |
4438 |
aggccgtgttttactttttgtgc |
4416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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