View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_21 (Length: 232)
Name: NF12441_low_21
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_21 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 13153609 - 13153800
Alignment:
| Q |
14 |
cctgtggagacgataatctactgttttattacttgttttgatttggtgcacctatcaattcgtccatcaatagacaatttagttcttggataccgatgtt |
113 |
Q |
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| T |
13153609 |
cctgtggagacgataatctactgttttattacttgttttgatttggtgcacctgtcaattcgtccatcaatagacaatttagttcttggataccgatgtt |
13153708 |
T |
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| Q |
114 |
ttcatgggtcctcataggtcagtttaccaagacttatcc---nnnnnnnnnnccagtgtgttaagcttgaaagcttttaacattgaacaaac |
202 |
Q |
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| T |
13153709 |
ttcatgggtcctcataggtcagttttccaagacttatcctttttttttttttccagtgttttaagcttgatagcttttaacattgaacaaac |
13153800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0999 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 2875 - 3080
Alignment:
| Q |
15 |
ctgtggagacgataatctactgttttattacttgttttgatttggtgcacctatcaattcgtccatcaatagacaatttagttcttggataccgatgttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
2875 |
ctgtggagacgataatctactgttttattacttgttttgatttggtgcacctgtcaattcatccatcaatagacaatttagttcttggataaccatgttt |
2974 |
T |
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| Q |
115 |
tcatgggtcctcataggtcagtttaccaagacttatcc---nnnnnnnnnnccagtgtgttaagcttgaaagcttttaacattgaacaaactttcttgtg |
211 |
Q |
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| T |
2975 |
tcatgggtcctcataggtcagttttccaagacttatcctttttttttttttccagtgttttaagcttgatagcttttaacattgaacaaactttcttgtc |
3074 |
T |
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| Q |
212 |
atgtcc |
217 |
Q |
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|||||| |
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| T |
3075 |
atgtcc |
3080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 13529008 - 13528944
Alignment:
| Q |
18 |
tggagacgataatctactgttttattacttgttttgatttggtgcacctatcaattcgtccatca |
82 |
Q |
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| T |
13529008 |
tggagacgataacttactactttattacttattatgatttggtgcacttatcaattcgcccatca |
13528944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 13618547 - 13618483
Alignment:
| Q |
18 |
tggagacgataatctactgttttattacttgttttgatttggtgcacctatcaattcgtccatca |
82 |
Q |
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| T |
13618547 |
tggagacgataacttactactttattacttattatgatttggtgcacttatcaattcgcccatca |
13618483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 25367745 - 25367789
Alignment:
| Q |
38 |
tttattacttgttttgatttggtgcacctatcaattcgtccatca |
82 |
Q |
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| T |
25367745 |
tttattacttgtttcgatttggtgcacttgtcaattcgtccatca |
25367789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 23854113 - 23854063
Alignment:
| Q |
14 |
cctgtggagacgataatctactgttttattacttgttttgatttggtgcac |
64 |
Q |
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| T |
23854113 |
cctgtggagacaataatttactactttattacttgttatgatttggtgcac |
23854063 |
T |
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