View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12441_low_24 (Length: 225)

Name: NF12441_low_24
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12441_low_24
NF12441_low_24
[»] chr3 (16 HSPs)
chr3 (64-213)||(12396222-12396367)
chr3 (65-213)||(14078148-14078292)
chr3 (98-203)||(6252635-6252739)
chr3 (98-201)||(15961447-15961550)
chr3 (65-171)||(15960185-15960289)
chr3 (65-123)||(40799085-40799140)
chr3 (98-197)||(6174522-6174620)
chr3 (113-213)||(19198689-19198789)
chr3 (65-120)||(9381439-9381493)
chr3 (153-204)||(26418544-26418595)
chr3 (65-120)||(13076293-13076345)
chr3 (65-120)||(8784669-8784721)
chr3 (65-120)||(9535009-9535061)
chr3 (65-120)||(28325633-28325685)
chr3 (65-120)||(39371452-39371504)
chr3 (62-120)||(51989972-51990026)
[»] chr1 (14 HSPs)
chr1 (1-125)||(24227996-24228120)
chr1 (98-213)||(20908657-20908772)
chr1 (65-213)||(17017778-17017914)
chr1 (65-171)||(20110720-20110823)
chr1 (64-120)||(3170946-3171002)
chr1 (65-120)||(3181549-3181604)
chr1 (65-120)||(36099863-36099918)
chr1 (65-120)||(9750044-9750097)
chr1 (65-120)||(10256276-10256328)
chr1 (153-213)||(18614195-18614255)
chr1 (65-120)||(23160888-23160940)
chr1 (1-63)||(24236324-24236382)
chr1 (65-120)||(28379141-28379197)
chr1 (65-120)||(52351484-52351540)
[»] chr2 (6 HSPs)
chr2 (64-203)||(24838285-24838423)
chr2 (65-175)||(24843388-24843494)
chr2 (153-213)||(22271376-22271436)
chr2 (64-134)||(20567415-20567490)
chr2 (64-134)||(10899350-10899417)
chr2 (65-120)||(24415821-24415873)
[»] scaffold0622 (1 HSPs)
scaffold0622 (64-212)||(1862-2005)
[»] chr4 (10 HSPs)
chr4 (98-213)||(14357567-14357682)
chr4 (110-204)||(15560509-15560602)
chr4 (98-175)||(10249156-10249233)
chr4 (98-213)||(7136306-7136421)
chr4 (141-204)||(11900375-11900438)
chr4 (65-120)||(29042445-29042499)
chr4 (144-213)||(41115582-41115651)
chr4 (65-120)||(3189165-3189217)
chr4 (65-120)||(19143791-19143846)
chr4 (65-120)||(29030331-29030384)
[»] chr5 (4 HSPs)
chr5 (65-213)||(2157068-2157211)
chr5 (64-175)||(34637703-34637810)
chr5 (64-120)||(14446305-14446358)
chr5 (65-120)||(11208905-11208957)
[»] chr8 (9 HSPs)
chr8 (65-213)||(16376146-16376289)
chr8 (65-125)||(23772372-23772432)
chr8 (65-121)||(33561127-33561183)
chr8 (65-120)||(36077347-36077400)
chr8 (59-118)||(17442761-17442820)
chr8 (65-118)||(29378756-29378807)
chr8 (64-120)||(23470277-23470330)
chr8 (65-120)||(23290312-23290364)
chr8 (65-120)||(23363538-23363594)
[»] chr6 (20 HSPs)
chr6 (65-213)||(12347282-12347428)
chr6 (98-213)||(7811228-7811343)
chr6 (98-213)||(25929711-25929827)
chr6 (113-213)||(16463468-16463568)
chr6 (64-156)||(30451855-30451942)
chr6 (64-213)||(17304072-17304223)
chr6 (67-213)||(32335030-32335171)
chr6 (102-175)||(25591856-25591929)
chr6 (67-161)||(23295989-23296079)
chr6 (64-161)||(17446502-17446594)
chr6 (144-213)||(7762912-7762980)
chr6 (65-203)||(21034236-21034367)
chr6 (65-120)||(27383785-27383839)
chr6 (65-120)||(27474169-27474223)
chr6 (65-120)||(27503667-27503721)
chr6 (143-213)||(19625049-19625119)
chr6 (65-122)||(24717721-24717779)
chr6 (65-120)||(1902083-1902136)
chr6 (141-213)||(17927015-17927087)
chr6 (60-120)||(25678755-25678815)
[»] scaffold0004 (1 HSPs)
scaffold0004 (98-175)||(87592-87667)
[»] chr7 (14 HSPs)
chr7 (103-175)||(7488757-7488829)
chr7 (65-213)||(16409001-16409146)
chr7 (98-158)||(14304672-14304732)
chr7 (65-213)||(3921590-3921733)
chr7 (65-120)||(601987-602040)
chr7 (61-120)||(11052633-11052689)
chr7 (64-120)||(45931031-45931086)
chr7 (65-120)||(1775516-1775571)
chr7 (65-120)||(1986921-1986976)
chr7 (65-120)||(1997544-1997597)
chr7 (65-120)||(8002929-8002981)
chr7 (65-120)||(8013574-8013626)
chr7 (65-120)||(42865211-42865263)
chr7 (65-120)||(42875836-42875889)
[»] scaffold0037 (1 HSPs)
scaffold0037 (65-169)||(76448-76547)
[»] scaffold0009 (1 HSPs)
scaffold0009 (106-213)||(267952-268060)
[»] scaffold0598 (1 HSPs)
scaffold0598 (65-204)||(2561-2707)
[»] scaffold0201 (1 HSPs)
scaffold0201 (65-161)||(18400-18493)
[»] scaffold0035 (1 HSPs)
scaffold0035 (65-213)||(28976-29117)
[»] scaffold0017 (1 HSPs)
scaffold0017 (68-135)||(9921-9989)
[»] scaffold0273 (1 HSPs)
scaffold0273 (163-213)||(4983-5033)
[»] scaffold0398 (1 HSPs)
scaffold0398 (65-121)||(13307-13360)
[»] scaffold0040 (1 HSPs)
scaffold0040 (65-122)||(2930-2987)
[»] scaffold1507 (1 HSPs)
scaffold1507 (65-120)||(254-306)
[»] scaffold0171 (1 HSPs)
scaffold0171 (65-120)||(269-321)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 12396222 - 12396367
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagttta 163  Q
    ||||||||| ||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12396222 ctgaaggtgggaaaaacacaaga-aggggggg---ttgaattgtggtttctttttcttctcctaaaactgaagttatttttcagaacctgatagagttta 12396317  T
Q  164 gcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12396318 gcttctgaagtaaggatcagaatctaaatgcagcggataaatagagagag 12396367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 14078292 - 14078148
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||||||||   || |||||  |||||||||||||||||||||||||||||||||||||| | || ||| ||  |||||||||| |     
T  14078292 tgaaggtgagaaaaacacaagaa--ggagggat--tgaattgtggtttctttttcttctcctaaaactgaagtcactgatcaaaagatgatagagttcaa 14078197  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
     |||||| | || | ||||  |||||||||||||||||| |||||||||    
T  14078196 gttctgatgcaatgttcattgtctaaatgcagcggataagtagagagag 14078148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 6252635 - 6252739
Alignment:
Q  98 gttgaattgtggtttctttttctt--ctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgca 195  Q
    ||||||||||||||||||||||||  ||||||   ||||||| | ||||||||| | ||||||||| |||||||||||| ||| ||| ||||||||||||    
T  6252635 gttgaattgtggtttctttttcttttctccta---ctgaagtcactgttcagaagcagatagagttcagcttctgaagtgaggttcagaatctaaatgca 6252731  T
Q  196 gcggataa 203  Q
    || |||||    
T  6252732 gcagataa 6252739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 15961550 - 15961447
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagc 197  Q
    |||||||||||||||| |||||||||||||||| |||||| |  |  ||||| ||||||||||||||||||||| | || | ||| | |||||||| |||    
T  15961550 gttgaattgtggtttcattttcttctcctaaaattgaagtcaccgaccagaagctgatagagtttagcttctgatgcaatgttcagagtctaaatgtagc 15961451  T
Q  198 ggat 201  Q
    ||||    
T  15961450 ggat 15961447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 15960289 - 15960185
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||| |||||||||||| |||| | |  ||||||||||||||| ||||||||||||||| |||||||| | || |||||| ||||||| ||| ||    
T  15960289 tgaaggtgataaaaacacaaga-agggagagg-gttgaattgtggtttttttttcttctcctaatactgaagtcactgatcagaagctgatagtgttcag 15960192  T
Q  165 cttctga 171  Q
     ||||||    
T  15960191 gttctga 15960185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 40799085 - 40799140
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttct 123  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||    
T  40799085 tgaaggtgagaaaaacacaaga-agggtggg--gttgaattgtgttttctttttcttct 40799140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 6174522 - 6174620
Alignment:
Q  98 gttgaattgtggtttctttttctt--ctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgca 195  Q
    ||||| ||||||||||||||||||  ||||||    |||||| | ||||||||| | ||||||||| ||||||| |||| ||| ||| ||||||||||||    
T  6174522 gttgagttgtggtttctttttcttttctcctat---tgaagtcactgttcagaagcagatagagttcagcttctaaagtgaggttcagaatctaaatgca 6174618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 19198789 - 19198689
Alignment:
Q  113 ctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagaga 212  Q
    |||||| |||||||||||||||||||| || ||| || ||||||||||| || |||||| |||| | | | |  ||||||||||| ||||| || |||||    
T  19198789 cttttttttctcctaaaactgaagttactgatcataagctgatagagttcaggttctgatgtaatgttaagagcctaaatgcagcagataagtaaagaga 19198690  T
Q  213 g 213  Q
    |    
T  19198689 g 19198689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 9381493 - 9381439
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  9381493 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 9381439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 26418595 - 26418544
Alignment:
Q  153 gatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaa 204  Q
    ||||||||| | |||||||||| | | |||||||||||||||||||||||||    
T  26418595 gatagagttgaacttctgaagtgatgttcataatctaaatgcagcggataaa 26418544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 13076293 - 13076345
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  13076293 tgaaggtgagaaaaacacaagaaagggggg---gttgaattgtgttttctttttct 13076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 8784669 - 8784721
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8784669 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 9535009 - 9535061
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||| ||||| |||  ||||||||||| |||||||||||    
T  9535009 tgaaggtgagaaaaacacaag-gaggggggg--gttgaattgtgttttctttttct 9535061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 28325685 - 28325633
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  28325685 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 28325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 39371452 - 39371504
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  39371452 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 39371504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 51990026 - 51989972
Alignment:
Q  62 agctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  51990026 agctgaaggtgagaaaaacacaaga-agggggg---gttgaattgtgttttctttttct 51989972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 24228120 - 24227996
Alignment:
Q  1 aagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaagctgaaggtgagaaaaacacaagagagggtgggatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||    
T  24228120 aagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaagttgaaggtgagaaaaacacaagaggggggggggtgtt 24228021  T
Q  101 gaattgtggtttctttttcttctcc 125  Q
    |||||||||||||||||||||||||    
T  24228020 gaattgtggtttctttttcttctcc 24227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 20908657 - 20908772
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagc 197  Q
    |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| || |||||||||||| | | ||| | |||||||||| |    
T  20908657 gttgaattgtggtttctttttcttctcctaaaactgaagtcactgctcagaacctgatagacttcagcttctgaagtgatgttcagagtctaaatgcaac 20908756  T
Q  198 ggataaatagagagag 213  Q
    |||||| |||||||||    
T  20908757 ggataagtagagagag 20908772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 17017778 - 17017914
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    |||||||||||||||||||||| |||| ||    |||||||||| |||||||| |||||      |||||||| | | ||||||| ||||||||||| ||    
T  17017778 tgaaggtgagaaaaacacaaga-agggggg----ttgaattgtgatttctttt-cttct------actgaagtcactattcagaagctgatagagttcag 17017865  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||||||||| ||| |||||| ||||||||||||||||| |||||||||    
T  17017866 cttctgaagtgaggttcataaactaaatgcagcggataagtagagagag 17017914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 20110823 - 20110720
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    |||||||||||||||||||||| |||| |||   |||||||||| ||||||||||||| |||||||||||  | | || |||||| ||||||||||| ||    
T  20110823 tgaaggtgagaaaaacacaagaaaggggggg---ttgaattgtgttttctttttcttcacctaaaactgagttcactgatcagaagctgatagagttcag 20110727  T
Q  165 cttctga 171  Q
     ||||||    
T  20110726 tttctga 20110720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 3170946 - 3171002
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  3170946 ctgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 3171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 3181549 - 3181604
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  3181549 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 3181604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 36099863 - 36099918
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  36099863 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 36099918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 9750097 - 9750044
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  9750097 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 9750044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 10256276 - 10256328
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  10256276 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 10256328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 18614195 - 18614255
Alignment:
Q  153 gatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||||||| ||||||||| || | | ||| ||||||||||||||||||||| | ||||||    
T  18614195 gatagagttcagcttctgatgtgatgttcagaatctaaatgcagcggataaaaatagagag 18614255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 23160940 - 23160888
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23160940 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23160888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24236382 - 24236324
Alignment:
Q  1 aagcaaaacaatcacaataacaacatagagctaagcaatgtgacctagcgagggatatcaaag 63  Q
    |||||||||| |||||||||||||| |||||||||   || |||||| |||||||||||||||    
T  24236382 aagcaaaaca-tcacaataacaacaaagagctaag---tgcgacctaacgagggatatcaaag 24236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 28379141 - 28379197
Alignment:
Q  65 tgaaggtgagaaaaacacaaga-gagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| | ||| |||  ||||||||||| |||||||||||    
T  28379141 tgaaggtgagaaaaacacaagagggggggggggggttgaattgtgttttctttttct 28379197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 52351540 - 52351484
Alignment:
Q  65 tgaaggtgagaaaaacacaagaga-gggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||||| ||| |||  || |||||||| |||||||||||    
T  52351540 tgaaggtgagaaaaacacaagagagggggggggggtcgaattgtgttttctttttct 52351484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 24838285 - 24838423
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagttta 163  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |    
T  24838285 ctgaaggtgagaaaaacacaagag-gggtggggggttgaattgtggtttctttttcttctcctaaaactgaagtcactattcagaacctgatagagttca 24838383  T
Q  164 gcttctgaagtaaggatcataatctaaatgcagcggataa 203  Q
    ||||||||||| | | ||| | |||||||||||| |||||    
T  24838384 gcttctgaagtgatgttcagagtctaaatgcagcagataa 24838423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 24843388 - 24843494
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||||||||  |||   || |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||| ||    
T  24843388 tgaaggtgagaaaaacacaagaacggg---ga-gttgaattgtggtttctttttcttctcctaaaactgaattcactgttcagaacctgatatagttcag 24843483  T
Q  165 cttctgaagta 175  Q
    |||||||||||    
T  24843484 cttctgaagta 24843494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 22271376 - 22271436
Alignment:
Q  153 gatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||||||| |||||||||||| | ||||| ||||||||||||||||||||| ||||||||    
T  22271376 gatagagttcagcttctgaagtgatgatcagaatctaaatgcagcggataaaaagagagag 22271436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 20567415 - 20567490
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatg-----ttgaattgtggtttctttttcttctcctaaaactga 134  Q
    |||||||||||||||||||||||| ||| |||  |     |||||||||| |||||||||||||||||||||||||    
T  20567415 ctgaaggtgagaaaaacacaagagggggggggggggggggttgaattgtgttttctttttcttctcctaaaactga 20567490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 10899417 - 10899350
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactga 134  Q
    ||||||||| ||||||||||||| | || |||   |||||||||| | |||||||||||||||||||||||    
T  10899417 ctgaaggtgggaaaaacacaagaaatgggggg---ttgaattgtgttgtctttttcttctcctaaaactga 10899350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 24415873 - 24415821
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| ||   ||||||||||| |||||||||||    
T  24415873 tgaaggtgagaaaaacacaagaaagggggg---gttgaattgtgttttctttttct 24415821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 1862 - 2005
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagttta 163  Q
    ||||||||||||||||||||||| |||| ||    |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |    
T  1862 ctgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggtttctttttcttctcttaaaactgaagttactgttcagatcctgatagagttca 1956  T
Q  164 gcttctgaagtaaggatcataatctaaatgcagcggataaatagagaga 212  Q
     |||||||||| | | ||| | |||||||||||||||||| || |||||    
T  1957 acttctgaagtgatgttcagagtctaaatgcagcggataagtaaagaga 2005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 14357567 - 14357682
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagc 197  Q
    ||||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||  ||||||||||| | | ||| | ||||||||||||    
T  14357567 gttgaattgtggtttctttctcgtctcctaaaactgaagtgactgttcagaacctgatagagttcggcttctgaagtgatgttcagagtctaaatgcagc 14357666  T
Q  198 ggataaatagagagag 213  Q
    |||||| |||||||||    
T  14357667 ggataagtagagagag 14357682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 15560509 - 15560602
Alignment:
Q  110 tttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaa 204  Q
    ||||||| | |||||||||| ||||||| | |||||||||||| |||||||| |||||||||||| | | ||| |||||||||||||||||||||    
T  15560509 tttctttgttttctcctaaa-ctgaagtcactgttcagaacctaatagagttcagcttctgaagtgatgttcagaatctaaatgcagcggataaa 15560602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 10249156 - 10249233
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagta 175  Q
    ||||||||||||||||||| |||||||||||||| ||| | | | |||||||| |||||||||| |||||||||||||    
T  10249156 gttgaattgtggtttctttctcttctcctaaaaccgaattcactattcagaacttgatagagttcagcttctgaagta 10249233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 7136306 - 7136421
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagc 197  Q
    |||||||| || |||||||||||||||||||||| ||||||| || |||||| |||||||| ||||| |||||  |||| | ||| | ||| | ||||||    
T  7136306 gttgaattttgttttctttttcttctcctaaaaccgaagttaatgatcagaagctgatagaatttaggttctgttgtaatgttcagagtctgagtgcagc 7136405  T
Q  198 ggataaatagagagag 213  Q
     ||||| |||||||||    
T  7136406 agataattagagagag 7136421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 11900375 - 11900438
Alignment:
Q  141 tgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaa 204  Q
    ||||||||| | ||||||||| || ||||||||| | | ||| |||||||||||||||||||||    
T  11900375 tgttcagaagcagatagagttcagattctgaagtgatgttcagaatctaaatgcagcggataaa 11900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 29042499 - 29042445
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  29042499 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 29042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 41115651 - 41115582
Alignment:
Q  144 tcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||||| | ||||||||| |||||||||||| |  |||| ||||| ||||||||||||||| | ||||||    
T  41115651 tcagaagcagatagagttcagcttctgaagtgataatcagaatcttaatgcagcggataaaaacagagag 41115582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 3189217 - 3189165
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  3189217 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 3189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 19143846 - 19143791
Alignment:
Q  65 tgaaggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||| |||||| |||  ||||||||||| |||||||||||    
T  19143846 tgaaggtgagaaaaacacaagaagaggg-ggggggttgaattgtgttttctttttct 19143791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 29030384 - 29030331
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  29030384 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 29030331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 2157211 - 2157068
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||||||||      |||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||    
T  2157211 tgaaggtgagaaaaacacaagaa-----gggaggttgaattgtgttttctttttcttctcctaaaactgaagtcattgatcagaagctgatagagttcag 2157117  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
     || ||| |||| | ||| | |||||||||||||||||| || ||||||    
T  2157116 gttttgatgtaatgttcagagtctaaatgcagcggataagtaaagagag 2157068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 34637703 - 34637810
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagttta 163  Q
    |||||||||||||||||||||| ||||| |||   |||||||||| |||||||||||||||||||||||||| | |  |||||||||||||||||||| |    
T  34637703 ctgaaggtgagaaaaacacaag-gaggggggg---ttgaattgtgttttctttttcttctcctaaaactgaaatcaccgttcagaacctgatagagttca 34637798  T
Q  164 gcttctgaagta 175  Q
    ||||||||||||    
T  34637799 gcttctgaagta 34637810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 14446305 - 14446358
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  14446305 ctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 14446358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 11208957 - 11208905
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||  |||| ||||||||||| |||||||||||    
T  11208957 tgaaggtgagaaaaacacaaga-agg--gggaggttgaattgtgttttctttttct 11208905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 16376289 - 16376146
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    |||||||||||||||||||||| |||| ||    ||||||||||||||||||||||||||||||||||||| |   |||||| |||||||||||||| |     
T  16376289 tgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggtttctttttcttctcctaaaactgaaatcgctgttcacaacctgatagagttcaa 16376195  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||||||||| | | ||| |||| |||||||||| |||| || ||||||    
T  16376194 cttctgaagtgatgttcagaatccaaatgcagcgaataagtaaagagag 16376146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 23772372 - 23772432
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcc 125  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  23772372 tgaaggtgagaaaaacacaagaggggggggggtgttgaattgtggtttctttttcttctcc 23772432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 33561183 - 33561127
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt 121  Q
    ||||||||||||||||||||||  |||||||  ||||||||||| || |||||||||    
T  33561183 tgaaggtgagaaaaacacaagaaggggtggggggttgaattgtgtttgctttttctt 33561127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 36077347 - 36077400
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  36077347 tgaaggtgagaaaaacacaagaaaggggggg--gttgaattgtgttttctttttct 36077400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 17442820 - 17442761
Alignment:
Q  59 caaagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttcttttt 118  Q
    |||| |||||||||||||||||||||||| ||| |||  ||||||||||| | |||||||    
T  17442820 caaatctgaaggtgagaaaaacacaagaggggggggggggttgaattgtgttgtcttttt 17442761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 29378756 - 29378807
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttcttttt 118  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |||||||||    
T  29378756 tgaaggtgagaaaaacacaagaggggggggg--gttgaattgtgttttcttttt 29378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 23470330 - 23470277
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23470330 ctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23470277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 23290312 - 23290364
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  23290312 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 23290364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 23363538 - 23363594
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggat-gttgaattgtggtttctttttct 120  Q
    |||||||||||||||||| |||| ||| ||| | ||||||||||| |||||||||||    
T  23363538 tgaaggtgagaaaaacacgagaggggggggggtggttgaattgtgttttctttttct 23363594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 12347282 - 12347428
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt-ctcctaaaactgaagttattgttcagaacctgatagagttta 163  Q
    ||||||||||||||||||||||  | | |||   ||||||||||||||||||||||| |||||||||||||||| | | |||| |||||||||||||| |    
T  12347282 tgaaggtgagaaaaacacaagaatgaggggg---ttgaattgtggtttctttttctttctcctaaaactgaagtcactattcaaaacctgatagagttca 12347378  T
Q  164 gcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||| | |||||  | ||| ||||||  |||||||||||| |||||||||    
T  12347379 gcttttaaagtagtgttcagaatctagttgcagcggataagtagagagag 12347428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 7811228 - 7811343
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagc 197  Q
    ||||||||||| ||||||||||||| |||||||||||| | | |||||||||| ||||||| ||||||||||||||||  ||||| | ||||  |||||     
T  7811228 gttgaattgtgttttctttttcttcacctaaaactgaattcactgttcagaacttgatagaatttagcttctgaagtactgatcaaagtctagttgcagg 7811327  T
Q  198 ggataaatagagagag 213  Q
    |||||| || ||||||    
T  7811328 ggataagtaaagagag 7811343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 25929711 - 25929827
Alignment:
Q  98 gttgaattgtggtttctttttctt--ctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgca 195  Q
    ||||||||||||||||||||||||  ||||||||  |||| | | |||||||||||||||| |||| |||||||||||| | | ||| | ||||||||||    
T  25929711 gttgaattgtggtttctttttcttttctcctaaat-tgaattcactgttcagaacctgatatagttcagcttctgaagtgatgttcagattctaaatgca 25929809  T
Q  196 gcggataaatagagagag 213  Q
    ||||||||| | ||||||    
T  25929810 gcggataaaaacagagag 25929827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 16463568 - 16463468
Alignment:
Q  113 ctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagaga 212  Q
    ||||||||||||||||||||||||||| |  |||||| ||||||||||| || |||||| |||| | ||| | |||||||||| |||||| | |||||||    
T  16463568 ctttttcttctcctaaaactgaagttactaatcagaagctgatagagttcaggttctgatgtaatgttcagagtctaaatgcaacggatagagagagaga 16463469  T
Q  213 g 213  Q
    |    
T  16463468 g 16463468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 30451942 - 30451855
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgata 156  Q
    ||||||||||||||||||||||| |||| ||    |||||||||||||  |||||||||||||||||||||||| | |||||||||| |||||    
T  30451942 ctgaaggtgagaaaaacacaaga-agggggg----ttgaattgtggttaatttttcttctcctaaaactgaagtcactgttcagaacttgata 30451855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 17304223 - 17304072
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttc---tcctaaaactgaagttattgttcagaacctgatagagt 160  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| |  ||||||||||   | ||   |||||||| | || |||||| | ||||||||    
T  17304223 ctgaaggtgagaaaaacacaaga-agggtggggggttgaattgtgttagctttttcttcgttttctcctactgaagtcactgatcagaagcagatagagt 17304125  T
Q  161 ttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    | |||||||||||| | | ||| |||||||||||||| ||||| || ||||||    
T  17304124 tcagcttctgaagtgatgttcagaatctaaatgcagcagataagtaaagagag 17304072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 213
Target Start/End: Original strand, 32335030 - 32335171
Alignment:
Q  67 aaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagct 166  Q
    |||||||||||||||||||| |||| |     |||||||||| |  ||||||||||||||||||||||| | | || |||||||||| ||||||| | ||    
T  32335030 aaggtgagaaaaacacaagaaaggggg-----ttgaattgtgttagctttttcttctcctaaaactgaattcactgatcagaacctggtagagttcaact 32335124  T
Q  167 tctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||| | || | ||| | |||||||||| ||| ||| |||||||||    
T  32335125 tctgatgaaatgttcaaagtctaaatgcaacggttaagtagagagag 32335171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 25591856 - 25591929
Alignment:
Q  102 aattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagta 175  Q
    ||||||| |||||||||||||||| ||||||||| | | | ||||||||||||||||||| |||||| ||||||    
T  25591856 aattgtgttttctttttcttctcccaaaactgaattcactattcagaacctgatagagttcagcttccgaagta 25591929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 23295989 - 23296079
Alignment:
Q  67 aaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtt 161  Q
    |||||||||||||||||||| ||||  ||| ||| ||||||||||||||||| ||||||||| |||||| | | |||||||||||| ||||||||    
T  23295989 aaggtgagaaaaacacaaga-aggg--gga-gtttaattgtggtttctttttattctcctaagactgaattcactgttcagaacctaatagagtt 23296079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 17446594 - 17446502
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtt 161  Q
    ||||||||||||||||||||||| ||      | ||||||||||| |  ||||||||||||||||||||||| | | || ||||||||||||||||||    
T  17446594 ctgaaggtgagaaaaacacaagaaaga-----aggttgaattgtgttaactttttcttctcctaaaactgaattcactgatcagaacctgatagagtt 17446502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 7762912 - 7762980
Alignment:
Q  144 tcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||||| | ||||||||| |||||||||||| | | ||||| ||||||||||||||||||| ||||||||    
T  7762912 tcagaagcagatagagttcagcttctgaagtgatgttcatattctaaatgcagcggataaa-agagagag 7762980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 21034236 - 21034367
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||||||||  ||| |     |||||||||| ||| |||||  |||||||||||| |||||| || ||| ||  |||||||||| ||    
T  21034236 tgaaggtgagaaaaacacaagaacggggg-----ttgaattgtgtttttttttt--tctcctaaaactaaagttactgatcataatttgatagagttcag 21034328  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataa 203  Q
     |||||| |||| | ||| | |||||||||| |||||||    
T  21034329 gttctgatgtaatgttcagagtctaaatgcatcggataa 21034367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 27383785 - 27383839
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27383785 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27383839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 27474169 - 27474223
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27474169 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 27503667 - 27503721
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  27503667 tgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 27503721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 19625049 - 19625119
Alignment:
Q  143 ttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||||||||||||||||| ||||| |||  | ||  ||| ||||||||||||||||||||| | ||||||    
T  19625049 ttcagaacctgatagagttcagcttttgagatgagattcagaatctaaatgcagcggataaaaacagagag 19625119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 24717779 - 24717721
Alignment:
Q  65 tgaaggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttcttc 122  Q
    ||||||||||||||||||||| || ||| |||  ||||||||||| |||||||||||||    
T  24717779 tgaaggtgagaaaaacacaagaagggggaggggggttgaattgtgttttctttttcttc 24717721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 1902083 - 1902136
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1902083 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 1902136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 17927015 - 17927087
Alignment:
Q  141 tgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||||||| | ||||||||| | ||||||| || ||| ||||||| |||||||||||| ||| || ||||||    
T  17927015 tgttcagaagcagatagagttcaacttctgatgtgaggttcataatttaaatgcagcggttaagtaaagagag 17927087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 25678755 - 25678815
Alignment:
Q  60 aaagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||| ||||||||||||||||||||||  ||| |||  ||| ||||||| |||||||||||    
T  25678755 aaagttgaaggtgagaaaaacacaagaagggggggggggttcaattgtgttttctttttct 25678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 87592 - 87667
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagta 175  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||||||    
T  87592 gttgaattgtggtttctttttcttctcctaaaactgaagtcactgttc--aacctgatagagttcagcttctgaagta 87667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 7488829 - 7488757
Alignment:
Q  103 attgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagta 175  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||| |||||||    
T  7488829 attgtggtttctttttcttctcctaaaactgaagtcactgttcagaacctgatagaattcagcttatgaagta 7488757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 16409001 - 16409146
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||| ||||    | |||| ||||||||||| ||||||||| ||||| ||||||  || | |||||||| || ||||||||||| ||    
T  16409001 tgaaggtgagaaaaacataaga---tgggggaggttgaattgtgttttctttttattctcttaaaacataattcattgttcaaaatctgatagagttcag 16409097  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||| |||||  | ||| | ||||| |||||||| ||| |||||||||    
T  16409098 cttctaaagtagtgttcagagtctaattgcagcggttaagtagagagag 16409146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 14304732 - 14304672
Alignment:
Q  98 gttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgataga 158  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| | |||| ||||||||    
T  14304732 gttgaattgtggtttctttttcttctcctaaaactaaagtcattgattagaagctgataga 14304672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 3921590 - 3921733
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||| |||| ||||  ||| ||| |||||||||||||||||||| ||  | | ||||||| |   |||| || | ||||||||| ||    
T  3921590 tgaaggtgagaaaaacataaga-aggg--gga-gttaaattgtggtttctttttcttttcacaca-ctgaagtcacaattcataagcagatagagttcag 3921684  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||||||||| | | ||| | |||||||||||||||||| |||||||||    
T  3921685 cttctgaagtgaagttcagattctaaatgcagcggataagtagagagag 3921733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 601987 - 602040
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |||||||||||    
T  601987 tgaaggtgagaaaaacacaagaggggggggg--gttgaattgtgttttctttttct 602040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 11052633 - 11052689
Alignment:
Q  61 aagctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  11052633 aagctgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 11052689  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 45931086 - 45931031
Alignment:
Q  64 ctgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  45931086 ctgaaggtgagaaaaacacaaga-aggggggggggttgaattgtgttttctttttct 45931031  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 1775516 - 1775571
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1775516 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 1775571  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 1986921 - 1986976
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1986921 tgaaggtgagaaaaacacaagaagggggggggggttgaattgtgttttctttttct 1986976  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 1997544 - 1997597
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  1997544 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 1997597  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 8002981 - 8002929
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8002981 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8002929  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 8013626 - 8013574
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  8013626 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 8013574  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 42865211 - 42865263
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  42865211 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 42865263  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 42875836 - 42875889
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  42875836 tgaaggtgagaaaaacacaagaagggggggg--gttgaattgtgttttctttttct 42875889  T

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Target: scaffold0037 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 76448 - 76547
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    |||||||||||||||||||||| |||| |     |||||||||||||||||| | |||||||||||||||||| | |||||||||||||||| |||| ||    
T  76448 tgaaggtgagaaaaacacaaga-agggggt----ttgaattgtggtttctttatgttctcctaaaactgaagtcactgttcagaacctgatacagttcag 76542  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 267952 - 268060
Alignment:
Q  106 gtggtttctttttctt--ctcctaaaactgaagttattgttcagaacctgatagagtttagcttctgaagtaaggatcataatctaaatgcagcggataa 203  Q
    ||||||||||||||||  |||||||| ||||||| | |||||||||||||||| |||| |||||||||||| ||| | | |||||||||||| | |||||    
T  267952 gtggtttctttttcttttctcctaaa-ctgaagtcactgttcagaacctgataaagttcagcttctgaagtgaggtttagaatctaaatgcaacagataa 268050  T
Q  204 atagagagag 213  Q
     || ||||||    
T  268051 gtaaagagag 268060  T

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Target: scaffold0598 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 2707 - 2561
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatg----ttgaattgtggtttctttttcttc---tcctaaaactgaagttattgttcagaacctgatag 157  Q
    ||||||||||||||||||||||| ||| |||  |    |||||||||| || ||||||||||   | ||   |||||||| | ||||||||| | |||||    
T  2707 tgaaggtgagaaaaacacaagaggggggggggggggggttgaattgtgtttgctttttcttcgttttctcctactgaagtcactgttcagaagcagatag 2608  T
Q  158 agtttagcttctgaagtaaggatcataatctaaatgcagcggataaa 204  Q
    |||| |||||||||||| | | ||| |||||||||||||||||||||    
T  2607 agttcagcttctgaagtgatgttcagaatctaaatgcagcggataaa 2561  T

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Target: scaffold0201 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 18400 - 18493
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtt 161  Q
    ||||||||||||||||||| | || || ||   ||||||||||| |||||||||||||||||||||| ||  ||  || |||||| |||||||||||    
T  18400 tgaaggtgagaaaaacacaggtgaaggggg---gttgaattgtgttttctttttcttctcctaaaaccgagtttcctgatcagaagctgatagagtt 18493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 28976 - 29117
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaagttattgttcagaacctgatagagtttag 164  Q
    ||||||||||||||||||||||  |||      ||| |||||||||||||||||||| ||||   | |||||| | |||||  || |  |||||||| ||    
T  28976 tgaaggtgagaaaaacacaagaagggg------gttaaattgtggtttctttttctt-tcctcctattgaagtcactgttctaaatcaaatagagttcag 29068  T
Q  165 cttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    ||||||||||  || | | |||||||||||||||||||| |||||||||    
T  29069 cttctgaagtgcggttgagaatctaaatgcagcggataagtagagagag 29117  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 9921 - 9989
Alignment:
Q  68 aggtgagaaaaacacaag-agagggtgggatgttgaattgtggtttctttttcttctcctaaaactgaa 135  Q
    |||||||||||||||||| | |||| |||  |||||||| || ||||||||||||||| ||||||||||    
T  9921 aggtgagaaaaacacaaggaaaggggggggggttgaattttgttttctttttcttctcttaaaactgaa 9989  T

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Target: scaffold0273 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 4983 - 5033
Alignment:
Q  163 agcttctgaagtaaggatcataatctaaatgcagcggataaatagagagag 213  Q
    |||||||||||| | ||||| ||||||||||||||||||||| | ||||||    
T  4983 agcttctgaagtgatgatcaaaatctaaatgcagcggataaaaatagagag 5033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 13360 - 13307
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttctt 121  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| ||||||||||||    
T  13360 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttctt 13307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 2987 - 2930
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttcttc 122  Q
    ||||||||||||||||||||||| ||| |||  ||||||||||| |  ||||||||||    
T  2987 tgaaggtgagaaaaacacaagaggggggggggggttgaattgtgttagctttttcttc 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1507 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1507
Description:

Target: scaffold1507; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 306 - 254
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  306 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 321 - 269
Alignment:
Q  65 tgaaggtgagaaaaacacaagagagggtgggatgttgaattgtggtttctttttct 120  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  321 tgaaggtgagaaaaacacaaga-aggggggg--gttgaattgtgttttctttttct 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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