View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_3 (Length: 582)
Name: NF12441_low_3
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 4931147 - 4931732
Alignment:
| Q |
1 |
gccacatctcacatgtgtgtaaattcttagtgtatatttggtatccctgcgagtatgttagaatcacggtgacct---------------accgtgattt |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||| |
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| T |
4931147 |
gccacatctcacatgtgtgtaaattcttagtgtatatttggtattcctgcaagtatgttagaatcacggtgatttgtgaagggatgatccaccgtgattt |
4931246 |
T |
|
| Q |
86 |
tacagaaactacaaagtttagtttttgaaaagtcaaggtagatcgctatcactctgacatactcaccgtaatacgaatcatacgctaagcttagtttaat |
185 |
Q |
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||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4931247 |
tacggaaactacaaagtgtagtttttgaaaagtcactgtagatcgctgtcactctgacatactcaccgtaatacgaatcatacgctaagcttggtttaat |
4931346 |
T |
|
| Q |
186 |
atcactgcaatgaatcacttcatgttactttgtggactcaaattatgtgcaactttgttgtcgctgcattttagaaaataatcgtttgatgaagatcata |
285 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4931347 |
atcactgcaatgaatcacttcctgttactttgtggactcaaattatgtgcaactttgttgtcgctgcattttaaaaaataatcgtttgatgaagatcata |
4931446 |
T |
|
| Q |
286 |
cttttcatattttatcaagtttaaaataaaaattcgaagatgcaaatcacatggactatctaaatctctacattgtcctctttttggacaaaaaatgcat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4931447 |
cttttcatattttatcaagtttaaaataaaaattcgaagatgcaaatcacatggactatctaaatctctacattgtcctctttttggacaaaaaatgcat |
4931546 |
T |
|
| Q |
386 |
atgatagtttgagggaatataaaataag--nnnnnnntgatcatattcacacttcgatgcaaatctatctatatcatctgaaggatatggaatatacatc |
483 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4931547 |
atgatagtttgagggaatataaaataagaaaaaaaaatgatcgtattcacacttcaatgcaaatctatctatatcatctgaaggatatggaatatacatc |
4931646 |
T |
|
| Q |
484 |
acatatttcacctttcaccctttcaacattacaatcatttacttatcaatcatttacaccatacgcccatgccgaagcctccacag |
569 |
Q |
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| T |
4931647 |
acatatttcacctttcaccctttcaacattacaatcatttacttatcaatcatttacaccatacgcccatgccgaagcctccacag |
4931732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 5173785 - 5173854
Alignment:
| Q |
60 |
agaatcacggtgacctaccgtgattttacagaaactacaaagtttagtttttgaaaagtcaaggtagatc |
129 |
Q |
| |
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| T |
5173785 |
agaatcacggtgatctaccgtgattttacagaagctacaaaatgtagatttttaaaaatcacggtagatc |
5173854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 17890713 - 17890785
Alignment:
| Q |
30 |
gtgtatatttggtatccctgcgagtatgttagaatcacggtgacctaccgtgattttacagaaactacaaagt |
102 |
Q |
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|||||| ||||||||| | | | |||||| ||||||||||||| | || ||||||||||| |||||| ||||| |
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| T |
17890713 |
gtgtatgtttggtatcaccgtgggtatgtcagaatcacggtgatccactgtgattttacataaactataaagt |
17890785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 9436122 - 9436154
Alignment:
| Q |
84 |
tttacagaaactacaaagtttagtttttgaaaa |
116 |
Q |
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| T |
9436122 |
tttacagaaactacaaagtgtagtttttgaaaa |
9436154 |
T |
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