View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_4 (Length: 466)
Name: NF12441_low_4
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 94 - 370
Target Start/End: Original strand, 29392887 - 29393163
Alignment:
| Q |
94 |
atgttttgagcttcaatgttttcttggtacaattgtttcatagatgccgttcattaaaactcttgctgcgttactttgaggatacacacatctttagtat |
193 |
Q |
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| T |
29392887 |
atgttttgagcttcaatgttttcttggtacaattgtttcatagaggccgttcattaaaactcttgctgcgttactttgaggatacacacatctttagtat |
29392986 |
T |
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| Q |
194 |
tggagattcaagacataacaaatcttttcttacttttagaatttggaaatttagctatcaagttgtgagcttttgatttgcatttgtttcaattttgtta |
293 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29392987 |
tggagattcaagacataacaattcttttcttacttttagaatttggaaatttagctatcaagttgtgagcttttgatttgcatttgtttcagttttgtta |
29393086 |
T |
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| Q |
294 |
gcacacgattaaacctacaatatggatgtaatgagtttaacctgtgggagacttttagaacttttagcagaggatgt |
370 |
Q |
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| T |
29393087 |
gcacacgattaaacctacaatatggatgtaatgagtttaacctgtggcagacttttagaacttttagcagaggatgt |
29393163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29392766 - 29392838
Alignment:
| Q |
1 |
tagtattagaagccacaaatgctccttcgtgttgctgattttctatctttgctacttaactgtatatctgtagta |
75 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29392766 |
tagtattagaagccacaaatgcttcttcttgttgctgattttc--tctttgctacttaactgtatatctgtagta |
29392838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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