View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12441_low_6 (Length: 440)
Name: NF12441_low_6
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12441_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Complemental strand, 4315623 - 4315213
Alignment:
| Q |
22 |
ccggtaagtaataatgtcactaattcagcttaatttaaccgtaattgaagataattgaagttcaatttcgagtttagttcttaataatttcatcaattat |
121 |
Q |
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| T |
4315623 |
ccggtaagtaataatgtcactaattcagcttaatttaaccgtaattgaagataattcaagttcaatttcgagtttagttcttaataatttcatcaattat |
4315524 |
T |
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| Q |
122 |
gaaactgaatttgaatattttcttcacagtatgatgatatggcggaactggaatggctttcgaatttcgtggaagattcatactccgctgaagaagaatt |
221 |
Q |
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| T |
4315523 |
gaaactgaatttgaatattttcttcacagtatgatgatatggcggaactggaatggctttcgaatttcgtggaagattcatactccgctgaagaagaatt |
4315424 |
T |
|
| Q |
222 |
gaaaacattgcaacttctctccggcgccggtgcggttaaaccgcaaacaccggaatcttcatcttccaccgacacacttccgtcattttccactgacgaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315423 |
gaaaacattgcaacttctctccggcgccggtgcggttaaaccgcaaacaccggaatcttcatcttccaccgacacacttccgtcattttccactgacgaa |
4315324 |
T |
|
| Q |
322 |
accgctcgtaacgcttcatttctccgtccagaaacacctctaccaggaaaagcacgtagcaaacgctcacgcgctgcacctggcgactggtccacgcgcc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315323 |
accgctcgtaacgcttcatttctccgtccagaaacacctctaccaggaaaagcacgtagcaaacgctcacgcgctgcacctggcgactggtccacgcgcc |
4315224 |
T |
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| Q |
422 |
tacttcatctc |
432 |
Q |
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||||||||||| |
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| T |
4315223 |
tacttcatctc |
4315213 |
T |
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