View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12441_low_9 (Length: 411)

Name: NF12441_low_9
Description: NF12441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12441_low_9
NF12441_low_9
[»] chr1 (5 HSPs)
chr1 (20-369)||(8641650-8642000)
chr1 (20-141)||(45500328-45500450)
chr1 (319-355)||(8641263-8641299)
chr1 (71-119)||(51198915-51198963)
chr1 (225-277)||(45500663-45500715)
[»] chr3 (7 HSPs)
chr3 (20-318)||(52717462-52717761)
chr3 (20-318)||(32558218-32558518)
chr3 (20-256)||(7050460-7050694)
chr3 (180-318)||(53343105-53343243)
chr3 (47-142)||(52715993-52716088)
chr3 (35-142)||(53343399-53343506)
chr3 (283-319)||(27982330-27982366)
[»] chr5 (2 HSPs)
chr5 (180-318)||(38558946-38559085)
chr5 (71-142)||(38559269-38559340)
[»] chr8 (2 HSPs)
chr8 (49-142)||(40600293-40600386)
chr8 (180-318)||(40600567-40600705)
[»] chr7 (1 HSPs)
chr7 (257-320)||(22297883-22297946)
[»] chr2 (1 HSPs)
chr2 (266-311)||(10174693-10174738)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 8641650 - 8642000
Alignment:
Q  20 ttatggcatcaatctaatttcttatattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 119  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8641650 ttatgacatcaatctaattccttttattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 8641749  T
Q  120 tgaattggaggggtgaagtaaaaggagac-ttttttataaggaaacagtggtttttaaatgaacaaggatagtgtgcataagtatacttgtgttctcann 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||      
T  8641750 tgaattggaggggtgaagtaaaaggagactttttttataaggaaacagtggtttttaaatgaacaaggatagtgtcctgaagtatacttgtgttctcatt 8641849  T
Q  219 nnnnngtctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtccactggggaaccacttagttaatggttcaccctagaatccacc 318  Q
         |||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||  |||||||||||| ||||||||||||||||||||||    
T  8641850 tttttgtctaacacatctaaacctttaatttaaatcaaatggtgtacaaaagtggtccatcggaaaaccacttagttgatggttcaccctagaatccacc 8641949  T
Q  319 aagttaaattaactaaattaaagttaaaaacttatctttaacttttaggtg 369  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8641950 aagttaaattaactaaattaaagttaaaaacttatctctaacttttaggtg 8642000  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 45500328 - 45500450
Alignment:
Q  20 ttatggcatcaatctaatttcttatattgccatttcaaactatgaattgagtttt-ctctttcaatcaaaaccaaattcgagaaagggtgttcatagatt 118  Q
    |||||||||| | |||||| ||| ||||||||||||| |||||| |||||||||| || ||| ||||||||||||||  |||||| ||||||||||||||    
T  45500328 ttatggcatccacctaattccttctattgccatttcatactatggattgagtttttctttttgaatcaaaaccaaatatgagaaaaggtgttcatagatt 45500427  T
Q  119 ttgaattggaggggtgaagtaaa 141  Q
     |||||||||| |||||||||||    
T  45500428 atgaattggagtggtgaagtaaa 45500450  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 8641263 - 8641299
Alignment:
Q  319 aagttaaattaactaaattaaagttaaaaacttatct 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  8641263 aagttaaattaactaaattaaagttaaaaacttatct 8641299  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 51198915 - 51198963
Alignment:
Q  71 ttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 119  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  51198915 ttttctctttgaatcaaaaccaaatttgagaaagggtgttcatggattt 51198963  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 45500663 - 45500715
Alignment:
Q  225 tctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtcca 277  Q
    |||||||||| ||||  |||||||||||||| ||| |||| ||||||||||||    
T  45500663 tctaacacatttaaacttttaatttaaatcggatgatgtataaaagtggtcca 45500715  T

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Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 52717462 - 52717761
Alignment:
Q  20 ttatggcatcaatctaatttcttatattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 119  Q
    ||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52717462 ttatgacatcaacctaattccttttattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 52717561  T
Q  120 tgaattggaggggtgaagtaaaaggaga-cttttttataaggaaacagtggtttttaaatgaacaaggatagtgtgcataagtatacttgtgttctcann 218  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      
T  52717562 tgaattggagaggtgaagtaaaaggagattttttttataaggaaacagtggtttttaaatgaacaaggatagtgtgcagaagtatacttgtgttctcatt 52717661  T
Q  219 nnnnngtctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtccactggggaaccacttagttaatggttcaccctagaatccacc 318  Q
         |||||||||||||||| |||||||||||||||||||||||||||||||||||||     |||||| |||||| ||||||||||||||||||||||    
T  52717662 tttttgtctaacacatctaaacctttaatttaaatcgaatggtgtacaaaagtggtccatccatgaaccatttagttgatggttcaccctagaatccacc 52717761  T

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Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 32558518 - 32558218
Alignment:
Q  20 ttatggcatcaatctaatttcttatattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 119  Q
    |||| ||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32558518 ttattgcatcaacctaattccttttattgtcatttcaaactatgaattgagttttctctttcaatcaaaaccaaatccgagaaagggtgttcatagattt 32558419  T
Q  120 tgaattggaggggtgaagtaaaaggaga-cttttttataaggaaacagtggtttttaaatgaacaaggatagtgtgcataagtatacttgtgttctca-n 217  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||      
T  32558418 tgaattggaggggtgaagtaaaaggagattttttttataaggaaacggtggtttttaaatgaacaaggatagtgtgcagaagtatacttatgttctcatt 32558319  T
Q  218 nnnnnngtctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtccactggggaaccacttagttaatggttcaccctagaatccac 317  Q
          |||||||| ||||||| |||||||||||||||||||||||||||||||| |||   || ||||||||||||| |||||||||||||||||||||    
T  32558318 ttttttgtctaacatatctaaacctttaatttaaatcgaatggtgtacaaaagtgatccgtcggtgaaccacttagttgatggttcaccctagaatccac 32558219  T
Q  318 c 318  Q
    |    
T  32558218 c 32558218  T

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Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 7050694 - 7050460
Alignment:
Q  20 ttatggcatcaatctaatttcttatattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattt 119  Q
    |||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||    
T  7050694 ttatggcatcaacctaattccttttattgccattttaaactatgaattgagttttctctttcgatcaaaaccaaatccgagaaag--tgttcatagattt 7050597  T
Q  120 tgaattggaggggtgaagtaaaaggagacttttttataaggaaacagtggtttttaaatgaacaaggatagtgtgcataagtatacttgtgttctcannn 219  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||       
T  7050596 tgaattggaggggtgaagtaaaaggagattttttaataaggaaacagtggtttttaaatgaataaggatagtgtgcagaagtatacttgtgttctcattt 7050497  T
Q  220 nnnngtctaacacatctaaatctttaatttaaatcga 256  Q
        |||||||||||||||| ||||||||||||||||    
T  7050496 ttttgtctaacacatctaaacctttaatttaaatcga 7050460  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 53343243 - 53343105
Alignment:
Q  180 aacaaggatagtgtgcataagtatacttgtgttctcannnnnnngtctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtccact 279  Q
    ||||||||||||||||| || ||||||||||||||||        |||||||||| |||| ||||||||||||||  |||||||| ||| |||||||||     
T  53343243 aacaaggatagtgtgcaaaaatatacttgtgttctcacttttgtctctaacacatttaaacctttaatttaaatctgatggtgtataaaggtggtccacc 53343144  T
Q  280 ggggaaccacttagttaatggttcaccctagaatccacc 318  Q
    |  |||||||||| || |||||||| |||||||||||||    
T  53343143 gatgaaccacttatttgatggttcatcctagaatccacc 53343105  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 52715993 - 52716088
Alignment:
Q  47 tgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattttgaattggaggggtgaagtaaaa 142  Q
    ||||||| ||||| ||| |||  ||||||||||| ||||||||||||||  |||||||||| |||||| |||||||||||||| ||||||||||||    
T  52715993 tgccattacaaaccatggattacgttttctctttgaatcaaaaccaaatctgagaaagggtattcataaattttgaattggagtggtgaagtaaaa 52716088  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 53343506 - 53343399
Alignment:
Q  35 aatttcttatattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattttgaattggaggggtg 134  Q
    |||||||| || |||| || ||||| ||| |||  ||||||||||| |||||||||||||| |||||||| || |||||| |||||||||||||| ||||    
T  53343506 aatttcttttactgccgttgcaaaccatggattacgttttctctttgaatcaaaaccaaatccgagaaagcgtattcataaattttgaattggagtggtg 53343407  T
Q  135 aagtaaaa 142  Q
    ||||||||    
T  53343406 aagtaaaa 53343399  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 27982366 - 27982330
Alignment:
Q  283 gaaccacttagttaatggttcaccctagaatccacca 319  Q
    |||||||||||||  ||||||||||||||||||||||    
T  27982366 gaaccacttagttggtggttcaccctagaatccacca 27982330  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 38559085 - 38558946
Alignment:
Q  180 aacaaggatagtgtgcataagtatactt-gtgttctcannnnnnngtctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtccac 278  Q
    ||||||||||||||||| || ||||||| |||||||||        ||||||||||||||| ||||||||||||||  |||||||| ||| |||||||||    
T  38559085 aacaaggatagtgtgcaaaaatatactttgtgttctcacttttgtctctaacacatctaaacctttaatttaaatctgatggtgtataaaggtggtccac 38558986  T
Q  279 tggggaaccacttagttaatggttcaccctagaatccacc 318  Q
     |  |||||||||| ||||||||||| |||||||||||||    
T  38558985 cgatgaaccacttatttaatggttcatcctagaatccacc 38558946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 38559340 - 38559269
Alignment:
Q  71 ttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattttgaattggaggggtgaagtaaaa 142  Q
    |||||||||| |||||||||||||| | ||||||||| |||||  |||||||||||||| ||||||||||||    
T  38559340 ttttctctttgaatcaaaaccaaatccaagaaagggtattcattaattttgaattggagtggtgaagtaaaa 38559269  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 40600293 - 40600386
Alignment:
Q  49 ccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattttgaattggaggggtgaagtaaaa 142  Q
    ||||| ||||| ||| |||  |||||||| || |||||||||||||| ||||||||||| || ||| |||||||||||||| ||||||||||||    
T  40600293 ccattacaaaccatggattacgttttctcgttgaatcaaaaccaaatccgagaaagggtatttataaattttgaattggagtggtgaagtaaaa 40600386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 40600567 - 40600705
Alignment:
Q  180 aacaaggatagtgtgcataagtatacttgtgttctcannnnnnngtctaacacatctaaatctttaatttaaatcgaatggtgtacaaaagtggtccact 279  Q
    |||||||||| |||||| || |||| |||||||||||        |||||||| |||||| |||||||||||||   |||||||| |||  ||||||||     
T  40600567 aacaaggatattgtgcaaaaatatatttgtgttctcacttttgtctctaacacgtctaaacctttaatttaaatttgatggtgtataaagatggtccacc 40600666  T
Q  280 ggggaaccacttagttaatggttcaccctagaatccacc 318  Q
    |  |||||||||| || |||||||| |||| ||||||||    
T  40600667 gatgaaccacttatttgatggttcatcctaaaatccacc 40600705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 22297883 - 22297946
Alignment:
Q  257 atggtgtacaaaagtggtccactggggaaccacttagttaatggttcaccctagaatccaccaa 320  Q
    ||||| || ||||||||||||| |  |||||||||| || ||||||||| ||||||||||||||    
T  22297883 atggtatataaaagtggtccaccgatgaaccacttaattgatggttcactctagaatccaccaa 22297946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 10174693 - 10174738
Alignment:
Q  266 aaaagtggtccactggggaaccacttagttaatggttcaccctaga 311  Q
    ||||||||||||| || |||||| |||||| |||||||||||||||    
T  10174693 aaaagtggtccaccggtgaaccatttagttgatggttcaccctaga 10174738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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