View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12442_high_1 (Length: 288)

Name: NF12442_high_1
Description: NF12442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12442_high_1
NF12442_high_1
[»] chr7 (11 HSPs)
chr7 (13-279)||(39591875-39592141)
chr7 (13-276)||(39577401-39577664)
chr7 (152-254)||(39334888-39334990)
chr7 (152-246)||(39550831-39550925)
chr7 (166-254)||(39346160-39346248)
chr7 (152-254)||(39360697-39360799)
chr7 (152-254)||(39541565-39541667)
chr7 (152-276)||(39567594-39567718)
chr7 (166-244)||(42176005-42176083)
chr7 (166-247)||(42135750-42135831)
chr7 (164-208)||(38390635-38390679)
[»] chr4 (2 HSPs)
chr4 (200-258)||(2884208-2884266)
chr4 (164-254)||(2900702-2900792)
[»] chr3 (1 HSPs)
chr3 (163-247)||(49770199-49770283)
[»] chr2 (1 HSPs)
chr2 (164-255)||(44213398-44213489)
[»] chr1 (1 HSPs)
chr1 (166-247)||(2163908-2163989)
[»] chr6 (1 HSPs)
chr6 (171-228)||(3828418-3828475)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 39592141 - 39591875
Alignment:
Q  13 ctgtggtgggaaatgaagtgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaaccgacgtcatttcaatattgaagtatacaat 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39592141 ctgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaaccgacgtcatttcaatattgaagtatacaat 39592042  T
Q  113 tcgattcactacaataaagtgacaatgagaaactcttacgaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39592041 tcgattcactacaataaagtgacaatgagaaactcttacgaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaa 39591942  T
Q  213 tatctactggtttggatagctcgacaacttttcaagttgtgagatcagtgatgcatgatgtccatct 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39591941 tatctactggtttggatagctcgacaacttttcaagttgtgagatcagtgatgcattatgtccatct 39591875  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 39577664 - 39577401
Alignment:
Q  13 ctgtggtgggaaatgaagtgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaaccgacgtcatttcaatattgaagtatacaat 112  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||| ||||| || ||||||||||||||  || | |||||| |||||| ||| |||      
T  39577664 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaacaaacataatttcagtattgaggtacacatc 39577565  T
Q  113 tcgattcactacaataaagtgacaatgagaaactcttacgaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaa 212  Q
      ||||||| | || ||||||||||||||||| ||||| ||| |||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  39577564 atgattcacgataacaaagtgacaatgagaaaatcttatgaacctattaatacaggggagatgctagtgggaacagctaaggctcttttcatggatgaaa 39577465  T
Q  213 tatctactggtttggatagctcgacaacttttcaagttgtgagatcagtgatgcatgatgtcca 276  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||  |||||||    
T  39577464 tatctactggtttggatagctcaacaacttttcaagttgtgaaatcaatgaagcagtatgtcca 39577401  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 39334888 - 39334990
Alignment:
Q  152 gaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttg 251  Q
    ||||||||||||  |||||||||| |||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  39334888 gaatctataaatgtaggggagatgttggttggaccaactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattg 39334987  T
Q  252 tga 254  Q
    |||    
T  39334988 tga 39334990  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 39550925 - 39550831
Alignment:
Q  152 gaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttca 246  Q
    |||||||| ||| ||||||||||| |||| ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39550925 gaatctatcaatgcaggggagatgttggttggaccggcgaaagctctattcatggatgaaatatctactggtttggatagctcgacaacttttca 39550831  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 39346160 - 39346248
Alignment:
Q  166 aggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttgtga 254  Q
    |||||||||| |||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  39346160 aggggagatgttggttggaccaactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtga 39346248  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 39360697 - 39360799
Alignment:
Q  152 gaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttg 251  Q
    ||||||||||||  ||| |||||| |||| |||||  |||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  39360697 gaatctataaatgtaggagagatgttggttggaccgactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattg 39360796  T
Q  252 tga 254  Q
    |||    
T  39360797 tga 39360799  T

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Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 39541667 - 39541565
Alignment:
Q  152 gaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttg 251  Q
    |||||||||| |  |||||||||| | || |||||  |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  39541667 gaatctataagtgtaggggagatgttagttggaccgactaaagctctattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattg 39541568  T
Q  252 tga 254  Q
    |||    
T  39541567 tga 39541565  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 39567718 - 39567594
Alignment:
Q  152 gaatctataaatacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttg 251  Q
    ||||||||||||  ||| || ||| |||| |||||  |||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||    
T  39567718 gaatctataaatgtaggagaaatgttggttggacccactaaagctctattcatggacgaaatatctactggtttggatagctcaacaacttttcaaattg 39567619  T
Q  252 tgagatcagtgatgcatgatgtcca 276  Q
    |||  ||| ||| ||| ||||||||    
T  39567618 tgaattcaatgaggcaagatgtcca 39567594  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 42176083 - 42176005
Alignment:
Q  166 aggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaactttt 244  Q
    |||||||||||||||||||||||| || |  || ||||||||||||||||| || || ||||||||||| || ||||||    
T  42176083 aggggagatgctggtaggaccagcaaaagtactcttcatggatgaaatatcaacaggattggatagctcaaccactttt 42176005  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 42135831 - 42135750
Alignment:
Q  166 aggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaa 247  Q
    |||||||||||||||||||||||| || |  || ||||||||||||||||| || || || ||||| || || |||||||||    
T  42135831 aggggagatgctggtaggaccagcaaaagtactgttcatggatgaaatatcaacaggattagatagttcaaccacttttcaa 42135750  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 38390635 - 38390679
Alignment:
Q  164 acaggggagatgctggtaggaccagctaaggctcttttcatggat 208  Q
    |||||||||||||||||||||| ||| || ||| |||||||||||    
T  38390635 acaggggagatgctggtaggactagcgaaagcttttttcatggat 38390679  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 2884208 - 2884266
Alignment:
Q  200 ttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttgtgagatc 258  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||| ||||||||||    
T  2884208 ttcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatc 2884266  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 2900792 - 2900702
Alignment:
Q  164 acaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttgtga 254  Q
    ||||| || ||| |||| |||||||| || ||| | ||||||||||||||||||||||| ||||| || || |||||||| ||| ||||||    
T  2900792 acaggagaaatgttggttggaccagcaaatgctttattcatggatgaaatatctactggcttggacagttccacaactttccaaattgtga 2900702  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 49770199 - 49770283
Alignment:
Q  163 tacaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaa 247  Q
    |||||| |||||||| || |||||||| |  || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||    
T  49770199 tacaggtgagatgctagttggaccagcaagagcgcttttcatggacgaaatatcgactggtttggacagttcaacaacatttcaa 49770283  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 44213489 - 44213398
Alignment:
Q  164 acaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttggatagctcgacaacttttcaagttgtgag 255  Q
    ||||| |||||| |||| |||||||| || ||  | |||||||||||||| ||||||||  |||| || || |||||||||||| |||||||    
T  44213489 acaggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactggactggacagttccacaacttttcaaattgtgag 44213398  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 2163989 - 2163908
Alignment:
Q  166 aggggagatgctggtaggaccagctaaggctctt-ttcatggatgaaatatctactggtttggatagctcgacaacttttcaa 247  Q
    ||||||||||||||| ||||||  ||||| | || |||||||| |||||||| ||||||||||| || || ||||||||||||    
T  2163989 aggggagatgctggttggaccaa-taagggtattgttcatggacgaaatatcaactggtttggacagttcaacaacttttcaa 2163908  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 3828475 - 3828418
Alignment:
Q  171 agatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttgga 228  Q
    ||||||| || ||||||||||  ||  ||||||||||||||||||| |||||||||||    
T  3828475 agatgctagttggaccagctagagcggttttcatggatgaaatatcgactggtttgga 3828418  T

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