View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12442_low_3 (Length: 215)
Name: NF12442_low_3
Description: NF12442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12442_low_3 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0265 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 56929 - 57134
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
56929 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctatgtacg |
57028 |
T |
|
| Q |
110 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgacaccata |
209 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
57029 |
aggtatgacgacatcatctaggcgctctttaatgtccctaaaatctgaaattactgccggtatgttccaggttccattaacgataacttccgacaccata |
57128 |
T |
|
| Q |
210 |
cctttc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
57129 |
cctttc |
57134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 21879074 - 21879279
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21879074 |
gaacctgtgatggaggacgcatgaaagagctagaaatcttcgaattcaaggctccatccaaagagtgcttccaaaccagcacatccctgagttgcgtacg |
21879173 |
T |
|
| Q |
110 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgacaccata |
209 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21879174 |
agatatgacgacagcatctaggctctctttaatgtccccaaaatctgaaataactgcaggtatgttccaggttccattaacaataacttccgacaccata |
21879273 |
T |
|
| Q |
210 |
cctttc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
21879274 |
cctttc |
21879279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 1925881 - 1926086
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1925881 |
gaacctgtgatggaggacgcatgaaagagctagcattcttcgaattcaagactccatccaaagagtgcttccaaaccagcacatccctgagatgtgtacg |
1925980 |
T |
|
| Q |
110 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgacaccata |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1925981 |
aggtatgacgacagcatctaggcgctcttgaatgtccccaaaatctgaaatagctgcaggtatgttccaggttccattaacaataacttccgacaccata |
1926080 |
T |
|
| Q |
210 |
cctttc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
1926081 |
cctttc |
1926086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 20795 - 21000
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
20795 |
gaacctgtgaaggaggacgcatgaaagagcgagcaagcttggaattcaagactccatccaaagagtgcttccaaaccagcacatccctgagttgagtacg |
20894 |
T |
|
| Q |
110 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgacaccata |
209 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20895 |
aggtaagacgacaacatctaggcgctctttaatgtccccaaaatctgcaatagctgcaggtatgttccaggtaccattaacaataacttccgacaccata |
20994 |
T |
|
| Q |
210 |
cctttc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
20995 |
cctttc |
21000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 21812014 - 21811809
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacg |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21812014 |
gaacctgtgaaggaggacgcatgaaagagcgagcaagcttggaattcaagactccatccaaagagtgcttccaaaccagcacatccctgagttgagtacg |
21811915 |
T |
|
| Q |
110 |
aggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgacaccata |
209 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21811914 |
aggtaagacgacaacatctaggcgctctttaatgtccccaaaatctgcaatagctgcaggtatgttccaggtaccattaacaataacttccgacaccata |
21811815 |
T |
|
| Q |
210 |
cctttc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
21811814 |
cctttc |
21811809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 7557 - 7754
Alignment:
| Q |
9 |
agaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtac |
108 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
7557 |
agaacctgtgcttgaggacgcatgaaagagctagctagcttcgaattcaagtttccatccaaa-agtgcttccaaaccaggacatccatgagcggtgtac |
7655 |
T |
|
| Q |
109 |
gaggtatgacgacagcatctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgacacca |
207 |
Q |
| |
|
|||||| ||||||||| || || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7656 |
gaggtaggacgacagcgtcgagacgctctctaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaactataacttcggacacca |
7754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 14858 - 14678
Alignment:
| Q |
24 |
ggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccagcacatccctgagctgtgtacgaggtatgacgacag |
123 |
Q |
| |
|
||||||| ||||||||| |||| ||||| |||| |||||||| ||||||||| ||||||| ||||||||| |||| | |||||||||| ||| |||| |
|
|
| T |
14858 |
ggacgcaagaaagagcttgcaagcttcgtgttcattgttccatctaaagagtgcatccaaactagcacatccacgagcggggtacgaggtaggacaacag |
14759 |
T |
|
| Q |
124 |
catctaggcactctttaatgtccccaaaatctgaaattactgcaggtatgttccaggttccattaacaataacttccgaca |
204 |
Q |
| |
|
| || |||| |||| |||||| ||||||||| |||| ||| ||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
14758 |
cctcgaggcgctctctaatgttcccaaaatcggaaagcgctgaaggcatgttccaggttccgataacgataacttccgaca |
14678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 128280 - 128202
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccag |
88 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| || ||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
128280 |
gaacctgtgaaggaggacgcaggaaagagctagccattttctaattcaagactccatccaaagagtgcatccaaaccag |
128202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 306097 - 306019
Alignment:
| Q |
10 |
gaacctgtgatggaggacgcatgaaagagctagcaatcttcgaattcaaggttccatccaaagagtgcttccaaaccag |
88 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| || ||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
306097 |
gaacctgtgaaggaggacgcaggaaagagctagccattttctaattcaagactccatccaaagagtgcatccaaaccag |
306019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University