View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12443_high_3 (Length: 403)
Name: NF12443_high_3
Description: NF12443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12443_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 194 - 391
Target Start/End: Complemental strand, 36815162 - 36814963
Alignment:
| Q |
194 |
ggactaattctctggttgcaagtaaataatgaaaagtctacgatcaaatttgagttttgatnnnnnnnt-tcagagggactaataagcat-atacatatt |
291 |
Q |
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| T |
36815162 |
ggactaattctctggttgcaagtaaataatgaaaagtctacgatcaaatttgagttttgataaaaaaatctcagagggactaataagcattatacatatt |
36815063 |
T |
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| Q |
292 |
ctgttctactggtcctgcatattctgccatataatacgggtctgatattttaacctattgttttatggcttttttgcttttggtttggactattgttcat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36815062 |
ctgttctactggtcctgcatattctgccatataatacgggtctgatattttaacctattgttttatggcttttttgcttttggtttggactattgttcat |
36814963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36815255 - 36815163
Alignment:
| Q |
1 |
atttcttggtaacaacagcaagtacttctgttttcagtaaaaatatagtgactgagggaactttcatgatcattctaattggaaaaaatggag |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36815255 |
atttcttggtaacaacagcaagtacttctgttttcagtaaaaatatagtgactgagggaactttcatgatcattctaattggaaaaaatggag |
36815163 |
T |
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