View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12443_low_2 (Length: 251)
Name: NF12443_low_2
Description: NF12443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12443_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 22684342 - 22684112
Alignment:
| Q |
16 |
acatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgctcaagt |
113 |
Q |
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| T |
22684342 |
acatcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgctcaagt |
22684243 |
T |
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| Q |
114 |
tttgtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaattaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684242 |
tttgtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaattaatg |
22684143 |
T |
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| Q |
214 |
ctttatttgtttaaatttaccacaggttctg |
244 |
Q |
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| T |
22684142 |
ctttatttgttcaaatttaccacaggttctg |
22684112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 22695825 - 22695722
Alignment:
| Q |
16 |
acatcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgctcaagt |
113 |
Q |
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||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||||||| |||||||||||| |||| |
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| T |
22695825 |
acatcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgctaaagt |
22695726 |
T |
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| Q |
114 |
tttg |
117 |
Q |
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|||| |
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| T |
22695725 |
tttg |
22695722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
| Q |
171 |
gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg |
244 |
Q |
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|||||||||||||||| ||| || ||| | |||| ||||| |||||||||||||| |||||||| ||||||||| |
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| T |
22695596 |
gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg |
22695522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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