View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12444_high_2 (Length: 385)
Name: NF12444_high_2
Description: NF12444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12444_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 38121039 - 38120658
Alignment:
| Q |
1 |
gcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121039 |
gcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcca |
38120940 |
T |
|
| Q |
101 |
cggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120939 |
cggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
38120840 |
T |
|
| Q |
201 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatg---atgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
38120839 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaa |
38120740 |
T |
|
| Q |
298 |
tttgtagttaataagtttacgctgttgtccatctaatgtagctaattcacacggttgcttagttctttttagtctgtgctgc |
379 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
38120739 |
tttgtagttaataagtttacactgttgtccatctaatgtagctaattcacacggttccttagttctttttagtttgtgctgc |
38120658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 38609084 - 38609400
Alignment:
| Q |
1 |
gcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||| | ||| ||| ||||||| | |||||||| | |
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| T |
38609084 |
gcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcga |
38609183 |
T |
|
| Q |
101 |
cggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38609184 |
cggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
38609283 |
T |
|
| Q |
201 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38609284 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaattt |
38609383 |
T |
|
| Q |
301 |
gtagttaataagtttac |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38609384 |
gtagttaataagtttac |
38609400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 38793867 - 38794183
Alignment:
| Q |
1 |
gcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||| | ||| ||| ||||||| | |||||||| | |
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|
| T |
38793867 |
gcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcga |
38793966 |
T |
|
| Q |
101 |
cggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38793967 |
cggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
38794066 |
T |
|
| Q |
201 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
38794067 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaattt |
38794166 |
T |
|
| Q |
301 |
gtagttaataagtttac |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38794167 |
gtagttaataagtttac |
38794183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
163 |
gcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtg |
259 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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|
| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
|
| Q |
260 |
gttcagttctttct |
273 |
Q |
| |
|
||| | |||||||| |
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|
| T |
34592944 |
gtttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 38287457 - 38287498
Alignment:
| Q |
266 |
ttctttctctgctgaagtgaatctctatgaaatttgtagtta |
307 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| |
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|
| T |
38287457 |
ttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 28730613 - 28730235
Alignment:
| Q |
1 |
gcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28730613 |
gcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggcga |
28730514 |
T |
|
| Q |
101 |
cggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| | |
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|
| T |
28730513 |
ctgaagaaacctgctctgctcttgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatgtt |
28730414 |
T |
|
| Q |
201 |
tgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || ||| |||| |||||||| | || | |||||||||||||||||| || || |||||||||| |
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|
| T |
28730413 |
tgagattgaagatcaccatggcctgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaattt |
28730314 |
T |
|
| Q |
301 |
gtagttaataagtttacgctgttgtccatctaatgtagctaattcacacggttgcttagttctttttagtctgtgctgc |
379 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
28730313 |
gtagttaataagtttacaccgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtttgtgctgc |
28730235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 33078483 - 33078557
Alignment:
| Q |
205 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgtggttcagttctttctctg |
276 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg |
33078557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 33078556 - 33078588
Alignment:
| Q |
293 |
tgaaatttgtagttaataagtttacgctgttgt |
325 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
33078556 |
tgaaatttgtagttaataagtttacactgttgt |
33078588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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