View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12444_high_4 (Length: 348)
Name: NF12444_high_4
Description: NF12444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12444_high_4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 3239119 - 3238786
Alignment:
| Q |
15 |
agatttacatacatatcttctccaccctttaggaaaattaaaattgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctccct |
114 |
Q |
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| T |
3239119 |
agatttacatacatatcttctccaccctttaggaaaattaaaattgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctccct |
3239020 |
T |
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| Q |
115 |
tttggattcataacaatccgcctgnnnnnnntatcgaaaacatacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttact |
214 |
Q |
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| T |
3239019 |
tttggattcataacaatccgcctgaaaaaaatatcgaaaacatacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttact |
3238920 |
T |
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| Q |
215 |
cagagcatgaatagcctttgaggaagaaactttctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccc |
314 |
Q |
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| T |
3238919 |
cagagcatgaatagcctttgaggaagaaactttctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccc |
3238820 |
T |
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| Q |
315 |
tggggatttcttctcaattgctttactgtttcag |
348 |
Q |
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| T |
3238819 |
tggggatttcttctcaattgctttactgtttcag |
3238786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 3243022 - 3242949
Alignment:
| Q |
247 |
tctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggga |
320 |
Q |
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| T |
3243022 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggga |
3242949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 3243204 - 3243141
Alignment:
| Q |
75 |
aattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctg |
138 |
Q |
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| T |
3243204 |
aattgataatgacaagtaaccagagttgttctcgttcccttttggattcataacaatccgcctg |
3243141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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