View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12444_low_1 (Length: 377)
Name: NF12444_low_1
Description: NF12444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12444_low_1 |
 | |
|
| [»] scaffold0529 (3 HSPs) |
| | |
|
| [»] scaffold0241 (2 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| | |
|
| [»] scaffold0112 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 27320724 - 27321075
Alignment:
| Q |
9 |
aacctgtgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgttta |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27320724 |
aacctatgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgttta |
27320823 |
T |
|
| Q |
109 |
ggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactcataactctgttttggtgatgttaagtactctgtaatgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27320824 |
ggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactcataactctgttttggtgatgttaagtactctgtaatgt |
27320923 |
T |
|
| Q |
209 |
tgagcactctaattacaatgtactttggtatgtgaatgctaagtttcgtggttacattgtggttacattttggtgatattttggttacattttggtaagc |
308 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27320924 |
taagcactctaattacaatgtattttggtatgtgaatgctaagtt-----------ttgtggttacattttggttatattttggttacattttggtaagc |
27321012 |
T |
|
| Q |
309 |
tgtaaatgctatgttttgtggttacattatggtaagctctttcaactcctcaaactccacagg |
371 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27321013 |
tgtaaatgctaagttttgtggttacattatggtaagctctttcaacttctcaaactccacagg |
27321075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 34172768 - 34173106
Alignment:
| Q |
9 |
aacctgtgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgttta |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34172768 |
aacctatgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgttta |
34172867 |
T |
|
| Q |
109 |
ggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactcataactctgttttggtgatgttaagtactctgtaatgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34172868 |
ggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactcataactctgttttggtgatgttaagtactctgtaatgt |
34172967 |
T |
|
| Q |
209 |
tgagcactctaattacaatgtactttggtatgtgaatgctaagtttcgtggttacattgtggttacattttggtgatattttggttacattttggtaagc |
308 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
34172968 |
taagcactctaattacaatgtattttggtatgtgaatgctaagttttgtggttacattttggttacattttgg----------------------taagc |
34173045 |
T |
|
| Q |
309 |
tgtaaatgctatgttttgtggttacattatggtaagctctttcaactcctcaaactccaca |
369 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
34173046 |
tgtaaatgctaagttttgtggttacattatggtaagttctttcaacttctcaaactccaca |
34173106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 5028510 - 5028783
Alignment:
| Q |
9 |
aacctgtgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgttta |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028510 |
aacctatgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgttta |
5028609 |
T |
|
| Q |
109 |
ggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactcataactctgttttggtgatgttaagtactctgtaatgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5028610 |
ggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactcataactctattttggtgatgttaagtactctgtaatgt |
5028709 |
T |
|
| Q |
209 |
tgagcactctaattacaatgtactttggtatgtgaatgctaagtttcgtggttacattgtggttacattttggt |
282 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
5028710 |
taagcactctaattacaatgtattttggtatgtgaatgctaagttttgtggttacattttggttacattatggt |
5028783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 5028780 - 5028848
Alignment:
| Q |
301 |
tggtaagctgtaaatgctatgttttgtggttacattatggtaagctctttcaactcctcaaactccacagg |
371 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
5028780 |
tggtaagctgtaaatgctaagttttgtggttacattatggtaggctctttcaa--actcaaactccacagg |
5028848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0529 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: scaffold0529
Description:
Target: scaffold0529; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 10177 - 9917
Alignment:
| Q |
15 |
tgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaa |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10177 |
tgaaagaacatgatgagactgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaa |
10078 |
T |
|
| Q |
115 |
gtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagt----------actcataactctgttttggtgatgttaagtactctgta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
10077 |
gtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactctaaagtactcttaactatcttttgatgatgttaagtactctgta |
9978 |
T |
|
| Q |
205 |
atgttgagcactctaattacaatgtactttggtatgtgaatgctaagtttcgtggttacat |
265 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
9977 |
atgttaagcactttaattacaatgtattttggtatgtgaatgctaagttttgtggttacat |
9917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0529; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 9847 - 9786
Alignment:
| Q |
308 |
ctgtaaatgctatgttttgtggttacattatggtaagctctttcaactcctcaaactccacagg |
371 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9847 |
ctgtaaatgctgagttttgtggttacattatggtaagctctttcaa--actcaaactccacagg |
9786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0529; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 9906 - 9858
Alignment:
| Q |
237 |
tatgtgaatgctaagtttcgtggttacattgtggttacattttggtgat |
285 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9906 |
tatgtcaatgttaagttttctggttacattgtggttacattttggtgat |
9858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 8975 - 8709
Alignment:
| Q |
15 |
tgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaa |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975 |
tgaaagaacatgatgagactgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaa |
8876 |
T |
|
| Q |
115 |
gtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagt----------actcataactctgttttggtgatgttaagtactctgta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
8875 |
gtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactctaaagtactcttaactatcttttgatgatgttaagtactctgta |
8776 |
T |
|
| Q |
205 |
atgttgagcactctaattacaatgtactttggtatgtgaatgctaagtttcgtggttacattgtggt |
271 |
Q |
| |
|
|| || |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
8775 |
attttaagcactttaattacaatgtattttggtatgtgaatgctaagttttgtggttacattatggt |
8709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 8645 - 8584
Alignment:
| Q |
308 |
ctgtaaatgctatgttttgtggttacattatggtaagctctttcaactcctcaaactccacagg |
371 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8645 |
ctgtaaatgctgagttttgtggttacattatggtaagctctttcaa--actcaaactccacagg |
8584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 14875700 - 14876049
Alignment:
| Q |
15 |
tgaaaaaacatgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaa |
114 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14875700 |
tgaaagaacatgatgacactgatgttactctaaattatattttggttatctactgtaaaattaagtactcttaattatattttgcttatgtttaggttaa |
14875799 |
T |
|
| Q |
115 |
gtgctctaaattagacttaattatcttttggtgatgtactctaaattt----------aagtactcataactctgttttggtgatgttaagtactctgta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
14875800 |
gtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactctaaagtactcataactatcttttggtgatgttaagtactctg-- |
14875897 |
T |
|
| Q |
205 |
atgttgagcactctaattacaatgtactttggtatgtgaatgctaagtttcgtggttacattgtggttacattttggtgatattttggttacattttggt |
304 |
Q |
| |
|
|||| ||||||||||||||| | | | | ||||| |||| |||| || ||||||||| ||||||||||||||||||||| || || |
|
|
| T |
14875898 |
-tgttaagcactctaattacattatggtcagctatgtcaatgttaagatttgtggttacaatgtggttacattttggtgata------------ttaagt |
14875984 |
T |
|
| Q |
305 |
aagctgtaaatgctatgttttgtggttacattatggtaagctctttcaactcctcaaactccacagg |
371 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14875985 |
actctgtaaatgctgagttttgtggttacattatggtaagctctttcaa--actcaaactccacagg |
14876049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 1230 - 1374
Alignment:
| Q |
23 |
catgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaagtgctcta |
122 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
1230 |
catgatgagactgatgttactcttaattatattttggttgtctaatgtaatatcaa-tattcttatttttattttgcttatgtttagtttaagtgctcta |
1328 |
T |
|
| Q |
123 |
aattagacttaattatcttttggtgatgtactctaaatttaagtac |
168 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1329 |
aattagtcttaattatcttttgatgatgtactctaaatttaagtac |
1374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 5853 - 5997
Alignment:
| Q |
23 |
catgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaagtgctcta |
122 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
5853 |
catgatgagactgatgttactcttaattatattttggttgtctaatgtaatatcaa-tattcttatttttattttgcttatgtttagtttaagtgctcta |
5951 |
T |
|
| Q |
123 |
aattagacttaattatcttttggtgatgtactctaaatttaagtac |
168 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5952 |
aattagtcttaattatcttttgatgatgtactctaaatttaagtac |
5997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 38446 - 38319
Alignment:
| Q |
23 |
catgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatgtttaggttaagtgctcta |
122 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
38446 |
catgatgagactgatgttactcttaattatattttggttatcta-tgtaatatcaagtattcttatttttattttgcttatgtttaggttaagggctcta |
38348 |
T |
|
| Q |
123 |
aattagacttaattatcttttggtgatgt |
151 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
38347 |
aattagtcttaattatcttttggtgatgt |
38319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 38330 - 38287
Alignment:
| Q |
180 |
ttttggtgatgttaagtactctgtaatgttgagcactctaatta |
223 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
38330 |
ttttggtgatgttaagtactttgtaatgttaagcactctaatta |
38287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 352
Target Start/End: Complemental strand, 38256 - 38226
Alignment:
| Q |
322 |
ttttgtggttacattatggtaagctctttca |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38256 |
ttttgtggttacattatggtaagctctttca |
38226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 7986675 - 7986829
Alignment:
| Q |
23 |
catgatgagaatgatgttactctaaattatattttggttatctaatgtaatatcaagtactcttaattatattttgcttatg-tttaggttaagt----- |
116 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| | | ||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
7986675 |
catgatgagactgatgttactcttaattatattttggtgttgtgatgtaatgtcaagtactcctaattatattttgcttatgttttaggttaagtactat |
7986774 |
T |
|
| Q |
117 |
-gctctaaattagacttaattatcttttggtgatgtactctaaatttaagtactc |
170 |
Q |
| |
|
|| |||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7986775 |
gcctataaagtactcttaattatcttttggtgatgtactctaaatttaagtactc |
7986829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 17505985 - 17505883
Alignment:
| Q |
67 |
atgtaatatcaagtactcttaattatattttgcttatgtttaggttaagtgctctaaattagacttaattatcttttggtgatgtactctaaatttaagt |
166 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||| ||||||||||| ||||||| || |||||| ||||||||| ||||| ||| |||||||| |
|
|
| T |
17505985 |
atgtaatattaagtactcttaatgatattttggttatg-ttaggttaagtactctaaagtactcttaatgctcttttggttatgtattctttatttaagt |
17505887 |
T |
|
| Q |
167 |
actc |
170 |
Q |
| |
|
|||| |
|
|
| T |
17505886 |
actc |
17505883 |
T |
|
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