View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12445_high_2 (Length: 507)

Name: NF12445_high_2
Description: NF12445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12445_high_2
NF12445_high_2
[»] chr8 (6 HSPs)
chr8 (16-417)||(14720843-14721240)
chr8 (147-487)||(28186697-28187037)
chr8 (111-322)||(19216279-19216490)
chr8 (45-100)||(12115073-12115128)
chr8 (191-276)||(18923541-18923626)
chr8 (351-415)||(14777406-14777470)
[»] chr3 (1 HSPs)
chr3 (9-487)||(7573191-7573668)
[»] chr2 (1 HSPs)
chr2 (48-322)||(22562584-22562858)
[»] chr7 (1 HSPs)
chr7 (114-487)||(10010260-10010633)
[»] scaffold0114 (1 HSPs)
scaffold0114 (192-271)||(23700-23779)
[»] chr5 (2 HSPs)
chr5 (111-273)||(23682887-23683049)
chr5 (111-273)||(23851762-23851924)


Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 14721240 - 14720843
Alignment:
Q  16 gagacagggggtcaccttgcctgaattttctcttacaatgaaaataaccattctgcttgccattgacatagattgaaagagtagcaaattttaagattgt 115  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14721240 gagacagggggtcaccctgcctgacttttctcttacaatgaaaataatcattctggttgccattgacatagattgaaagagtagcaaattttaagattgt 14721141  T
Q  116 atgaatccaagaacataaagtatcattaaaaccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgtctacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||    
T  14721140 atgaatccaagaacataaagtatcattaaaaccaaactta----atacactaagaagcaatttccactccaatgtattaaaagcttttgagatgtctacc 14721045  T
Q  216 ttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaagtgatgcagatgccatctttaatgttcttacctttaatgaagc 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14721044 ttgaaaactaaatttcctgcataagctttctgatgaaggtgattgattgcttttgaagtgatgtagatgccatctttaatgttcttacctttaatgaagc 14720945  T
Q  316 ctctttgcttaggagaaataatcaaattcataaaaggtgccaatttgtctgctagaattttggaaataatcaagaatttgaagttggctagagcaattgg 415  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  14720944 ctctttgctcaggagaaataatcaaattcataaaaggtgccaatctgtctgctagaattttggaaataatcttgaatttgaagttggctagagcaattgg 14720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 147 - 487
Target Start/End: Original strand, 28186697 - 28187037
Alignment:
Q  147 ccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgtctaccttgaaagctaaatttcctgcataagctttct 246  Q
    |||||||| ||||| ||| ||||||||||||| ||||||||||  |||||||| ||||||||||| |||||||||| |||||| |||||||| ||||| |    
T  28186697 ccaaactttcttaacacagtaagaagaaatttccactccaatgtgtcaaaagcctttgagatgtcaaccttgaaaggtaaattccctgcatatgcttttt 28186796  T
Q  247 gatgaaggtgattgattgcttctgaagtgatgcagatgccatctttaatgttcttacctttaatgaagcctctttgcttaggagaaataatcaaattcat 346  Q
    |||| || ||||| ||||||||||| ||||| || || |||||||| || ||  | ||||| ||||||||||||||||  || |||||||||||||||||    
T  28186797 gatggagatgatttattgcttctgatgtgatacaaataccatctttgatatttcttcctttgatgaagcctctttgctctggtgaaataatcaaattcat 28186896  T
Q  347 aaaaggtgccaatttgtctgctagaattttggaaataatcaagaatttgaagttggctagagcaattggtctatactgtccaacattagtaacattagga 446  Q
    ||| || |||||| |||||||||||||||| || ||||||  ||| ||||| || |||| |||||||||||| || || |||||||||||| |||  |||    
T  28186897 aaagggagccaatctgtctgctagaattttagagataatcttgaacttgaaatttgctaaagcaattggtctgtaatgaccaacattagtagcatctgga 28186996  T
Q  447 actttaggaataaggatgattgtgtttgcattgaagttggg 487  Q
    | ||| ||| | | |||||||||||||||||||||||||||    
T  28186997 attttcggagtcaagatgattgtgtttgcattgaagttggg 28187037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 322
Target Start/End: Original strand, 19216279 - 19216490
Alignment:
Q  111 attgtatgaatccaagaacataaagtatcattaaaaccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgt 210  Q
    ||||||||||||||||| || ||  | |||   |||||||||||||| |  || || || | |||||| || |||||||  ||||||||||| || || |    
T  19216279 attgtatgaatccaagagcacaatttctcacagaaaccaaacttactgagaactctgagcaaaaatttccattccaatgtgtcaaaagctttggaaatat 19216378  T
Q  211 ctaccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaagtgatgcagatgccatctttaatgttcttacctttaat 310  Q
    | || || ||||||| ||| |||||| ||| ||| ||||||||||| || ||| ||||||| || |||||||| |||||||| || ||| | ||||| ||    
T  19216379 ccactttaaaagctagattacctgcaaaagatttgtgatgaaggtggttaattacttctgaggtaatgcagattccatctttgatattcctcccttttat 19216478  T
Q  311 gaagcctctttg 322  Q
    ||| ||||||||    
T  19216479 gaatcctctttg 19216490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 12115128 - 12115073
Alignment:
Q  45 ctcttacaatgaaaataaccattctgcttgccattgacatagattgaaagagtagc 100  Q
    ||||||||||||||||||||||| ||||| ||||| ||| | ||||||||||||||    
T  12115128 ctcttacaatgaaaataaccattttgcttaccatttacagatattgaaagagtagc 12115073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 18923541 - 18923626
Alignment:
Q  191 atcaaaagcttttgagatgtctaccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaagtga 276  Q
    |||||||||||| || || |||||||||||||| || || |||||| ||||||| |||||||| || || || ||||| |||||||    
T  18923541 atcaaaagctttagaaatatctaccttgaaagccaagttacctgcaaaagctttatgatgaagatggttaatagcttcagaagtga 18923626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 14777406 - 14777470
Alignment:
Q  351 ggtgccaatttgtctgctagaattttggaaataatcaagaatttgaagttggctagagcaattgg 415  Q
    ||||||||  |||||||||| |||||||||||||||  ||||||||| || || ||||| |||||    
T  14777406 ggtgccaacctgtctgctaggattttggaaataatcttgaatttgaaattagcaagagctattgg 14777470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 7573668 - 7573191
Alignment:
Q  9 agaagcagagacagggggtcaccttgcctgaattttctcttacaatgaaaataaccattctgcttgccattgacatagattgaaagagtagcaaatttta 108  Q
    ||||| || |||| ||||||||| ||||||| |  |||||| ||||| || || ||||| || |||||||||||| ||||||||||||||||| | ||||    
T  7573668 agaagaagggacaaggggtcaccctgcctgactcctctcttgcaatggaagtatccattttgtttgccattgacagagattgaaagagtagcagagttta 7573569  T
Q  109 agattgtatgaatccaagaacataaagtatcattaaaaccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagat 208  Q
      ||||| |  ||||| || || ||  ||||||| || |||||||| ||||  || | |||||||||| | ||||| |  |  |||||| | ||||||||    
T  7573568 gaattgtgttgatccaggagcaaaatctatcattgaatccaaactttcttagcac-caaagaagaaatgtccactcgagcgtgtcaaaaacctttgagat 7573470  T
Q  209 gtctaccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaagtgatgcagatgccatctttaatgttcttaccttta 308  Q
    ||| ||||||||||| ||||| |||||||| ||||| |||||  | ||||| ||||||||||| ||||| ||||| ||||||||||| ||  | |||||     
T  7573469 gtcaaccttgaaagccaaattccctgcatatgctttttgatggtgatgatttattgcttctgatgtgatacagataccatctttaatatttcttcctttg 7573370  T
Q  309 atgaagcctctttgcttaggagaaataatcaaattcataaaaggtgccaatttgtctgctagaattttggaaataatcaagaatttgaagttggctagag 408  Q
    ||||||||||||||||  || || ||||||||||||||||| || |||||| ||||| |||||||||| || ||||||  ||| ||||| || |||| ||    
T  7573369 atgaagcctctttgctctggtgagataatcaaattcataaagggagccaatctgtctactagaattttagagataatcttgaacttgaaatttgctaaag 7573270  T
Q  409 caattggtctatactgtccaacattagtaacattaggaactttaggaataaggatgattgtgtttgcattgaagttggg 487  Q
    |||||||||| || || |||||||||||| ||| ||||| ||||||||| | |||||||||||| ||||||||||||||    
T  7573269 caattggtctgtaatgaccaacattagtagcatcaggaattttaggaatcaagatgattgtgttggcattgaagttggg 7573191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 48 - 322
Target Start/End: Complemental strand, 22562858 - 22562584
Alignment:
Q  48 ttacaatgaaaataaccattctgcttgccattgacatagattgaaagagtagcaaattttaagattgtatgaatccaagaacataaagtat-cattaaaa 146  Q
    ||||||||||| |||||||||||||||||||| ||| |||| || ||||||||| | || | ||| ||||||||||||||||| ||| | | |||| |||    
T  22562858 ttacaatgaaagtaaccattctgcttgccattaacagagatagagagagtagcagacttgaggatggtatgaatccaagaaca-aaattgtgcattgaaa 22562760  T
Q  147 ccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgtctaccttgaaagctaaatttcctgcataagctttct 246  Q
    ||||| |||||||| ||| | || || || || || || |  | |||||| ||||| |||||||| ||||| |||||||  |||||  |||||| |||||    
T  22562759 ccaaatttacttaaaacagttagcaggaacttccattcaagagtatcaaaggctttggagatgtccaccttaaaagctaggtttcccacataagatttct 22562660  T
Q  247 gatgaaggtgattgattgcttctgaagtgatgcagatgccatctttaatgttcttacctttaatgaagcctctttg 322  Q
    ||||||| ||||||||||| ||  ||||||| || || ||||| || |||||  |||||||||| || ||||||||    
T  22562659 gatgaagatgattgattgcctcataagtgatacaaataccatccttgatgtttctacctttaataaaacctctttg 22562584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 487
Target Start/End: Complemental strand, 10010633 - 10010260
Alignment:
Q  114 gtatgaatccaagaacataaagtatcattaaaaccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgtcta 213  Q
    |||||||||||||| || ||  ||||||||||||||||||| || |  ||||| || || ||||| || || |  | |||||| ||||| || || ||||    
T  10010633 gtatgaatccaagagcagaacttatcattaaaaccaaacttgctaagaacactgaggaggaatttccattctagggtatcaaacgctttagaaatatcta 10010534  T
Q  214 ccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaagtgatgcagatgccatctttaatgttcttacctttaatgaa 313  Q
    | |||||||||| ||| |||||  ||| ||| |||||||| || ||||| ||||| |||||||  || || ||||| ||||||||  | ||| | |||||    
T  10010533 ctttgaaagctagattacctgcgaaagatttttgatgaagatggttgatggcttcagaagtgacacaaattccatccttaatgtttctgcctcttatgaa 10010434  T
Q  314 gcctctttgcttaggagaaataatcaaattcataaaaggtgccaatttgtctgctagaattttggaaataatcaagaatttgaagttggctagagcaatt 413  Q
     |||||||||| ||||||||| ||    ||||| | ||| || | | |||| || | ||| || ||||| |||  ||| ||||| || ||||  || |||    
T  10010433 acctctttgctcaggagaaatgatgttgttcatgataggagctagtctgtcagccaaaatcttcgaaatgatcttgaacttgaaatttgctaaggctatt 10010334  T
Q  414 ggtctatactgtccaacattagtaacattaggaactttaggaataaggatgattgtgtttgcattgaagttggg 487  Q
    ||||| || || || || |    | |||  ||||||||||||||||| |||||||||||||| ||||| |||||    
T  10010333 ggtctgtattggcccacctgtaaagcatccggaactttaggaataagaatgattgtgtttgcgttgaaattggg 10010260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 23700 - 23779
Alignment:
Q  192 tcaaaagcttttgagatgtctaccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctga 271  Q
    ||||||||||| |||||||||||||| ||||| | ||| |||||| ||||||| |  || || |||||||| ||||||||    
T  23700 tcaaaagctttggagatgtctaccttaaaagcaagattacctgcaaaagctttgttgtgtagatgattgatcgcttctga 23779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 273
Target Start/End: Complemental strand, 23683049 - 23682887
Alignment:
Q  111 attgtatgaatccaagaacataaagtatcattaaaaccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgt 210  Q
    ||||||| |||||||||  | ||  ||||||||||||||||  | ||||| || || ||||| || || || || || |  |||||||||||||| || |    
T  23683049 attgtattaatccaagagaaaaatttatcattaaaaccaaaactgcttaagactctgagaaggaacttccattctaaagtgtcaaaagcttttgaaatat 23682950  T
Q  211 ctaccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaag 273  Q
    |||| |||||||||| |||||| ||| |||  || |  ||||| |||||||| ||||||||||    
T  23682949 ctactttgaaagctagatttccagcaaaagacttgttgtgaagttgattgatggcttctgaag 23682887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 273
Target Start/End: Original strand, 23851762 - 23851924
Alignment:
Q  111 attgtatgaatccaagaacataaagtatcattaaaaccaaacttacttaatacactaagaagaaattttcactccaatgcatcaaaagcttttgagatgt 210  Q
    ||||||| |||||||||  | ||  ||||||||||||||||  | ||||| || || ||||| || || || || || |  |||||||||||||| || |    
T  23851762 attgtattaatccaagagaaaaatttatcattaaaaccaaaactgcttaagactctgagaaggaacttccattctaaagtgtcaaaagcttttgaaatat 23851861  T
Q  211 ctaccttgaaagctaaatttcctgcataagctttctgatgaaggtgattgattgcttctgaag 273  Q
    |||| |||||||||| |||||| ||| |||  || |  ||||| |||||||| ||||||||||    
T  23851862 ctactttgaaagctagatttccagcaaaagacttgttgtgaagttgattgatggcttctgaag 23851924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University