View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12445_low_1 (Length: 1231)
Name: NF12445_low_1
Description: NF12445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12445_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 843; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 19 - 985
Target Start/End: Original strand, 23533812 - 23534788
Alignment:
| Q |
19 |
tgtttgtctatagttttgccgttattatctttgaaaaagagaactaaacaaacnnnnnnn-tgtgttagagaactcattagaaagccccaccaaaactac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23533812 |
tgtttgtctatagttttgccgttattatctttgaaaaagagaactaaacaaacaaaaaaaatgtgttagagaactcattagaaagccccaccaaaactaa |
23533911 |
T |
|
| Q |
118 |
actaatataaggcatgaataaagacaatgtcacaatactgccgtagtgttaacatcaatccaactatccaagaccccacaagtaaatgcaacatataaag |
217 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23533912 |
actaatataaggcatgaataaagacaatgccacaatactgccgtagtgttaacatcaatccaactatccaagaccccacaagtaaatgcaacatataaag |
23534011 |
T |
|
| Q |
218 |
tgcatgtgatgagaagggagcatagtccataatgaagacacacacaaacacattattatgactaaaaaggaccacttcaattactttgtagatgtagaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23534012 |
tgcatgtgatgagaagggagcatagtccataatgaagacacacacaaacacattattatgactaaaaaggaccacttcaattactttgtagatgtagaga |
23534111 |
T |
|
| Q |
318 |
gggatagaacagtggaatttaaggaacatcggcccacacctcaataaagtttgaaaacgaggatgacagtttctacagtaagttttcttattataccaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23534112 |
gggatagaacagtggaatttaaggaacatcggcccacacctcaataaagtttgaaaacgaggatgacagtttctacagtaagttttcttattataccaaa |
23534211 |
T |
|
| Q |
418 |
acctgcccataagccccaaaatcctctacctttgtttctatccatcctatgtggtgtagtgatagtggcaggagaaacaacttgtttatatatacaccat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23534212 |
acctgcccataagccccaaaatcctctacctttgtttctatccatcctatgtggtgtagtgatagtggcaggagaaacaacttgtttatatatacaccat |
23534311 |
T |
|
| Q |
518 |
tatatttttgtttgatcctaaatgcttttaaaaatatctttttgcttttcttgattcaaatcattattttgatcccatatatttataagattattgacta |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23534312 |
tatatttttgtttgatcctaaatgcttttaaaaatatcttttttcttttcttgattcaaatcattattttgatcccatatatttataagattattgacta |
23534411 |
T |
|
| Q |
618 |
aaccataaaattgatggtcaccaatcatgcttgttataatttcatcatcggattaggtttttgtgcagtcacaatactacgttcaatcactcatccactt |
717 |
Q |
| |
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|||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
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|
| T |
23534412 |
aaccttaaaattgatggtcaccaatcataccggttataatttcatcatcggattaggtttttgtgcagtcacaatactacgtccagtcactcatccattt |
23534511 |
T |
|
| Q |
718 |
atatgtgactgtgtgactgaatgcagtatatgactaaatcgaaattcttcgtgatctaccaatgtcacagttgttgagttagcatgttgtttaggacatg |
817 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||| |
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|
| T |
23534512 |
atatgtgactgtgtgactgaacacagtgtatgactaaatcgaaattctttgtgatctaccaatgtcacaattgttgagttagcatgttctttaagacatg |
23534611 |
T |
|
| Q |
818 |
ttcaattgaagtatg-tttcataa--------atttgtttgtgactattattgatctctattttgtggttcaaattcatcaaaattgattgaacatgttg |
908 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23534612 |
ttcaattgaagtatgttttcataaatttgtttatttgtttgtgactattattgatctctattttgtggttcaaattcatcaaaattgattgaacatgttg |
23534711 |
T |
|
| Q |
909 |
acaggtgaactaataaatttattgatggtcttcggtttcaatgattaagcaacttgagtgactcaattatcaatcaa |
985 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23534712 |
acaggtgaactaataaatttattgatggtcttcggtttcaatgattaagcaacttgagtgactcaattatcaatcaa |
23534788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1067 - 1186
Target Start/End: Original strand, 23534893 - 23535009
Alignment:
| Q |
1067 |
acaaattaactattactagggtttgaactcaaccttgagtatgcaagttaaaagcagtgagtatcactgccactgagtgagtcctaggagttgctaaact |
1166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
23534893 |
acaaattaactattactagggtttgaactcaaccttgagtatgcaagttaaaagcagtaagtatcactgccac---atgagtcctaggagttgctaaaaa |
23534989 |
T |
|
| Q |
1167 |
tttttacccatttacggatg |
1186 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
23534990 |
attttacccatttacggatg |
23535009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 17790059 - 17789805
Alignment:
| Q |
19 |
tgtttgtctatagttttgccgttattatctttgaaaaagagaactaaacaaacnnnnnnn--tgtgttagagaactcattagaaagccccaccaaaacta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| ||| || |||||||| |
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|
| T |
17790059 |
tgtttgtctatagttttgccgttattatctttcaaaaagagaactaaacaaaaaaaaaaaaatgtgtttaagaactcattagaatgcctcatcaaaacta |
17789960 |
T |
|
| Q |
117 |
cactaatataaggcatgaataaagacaatgtcacaatactgccgtagtgttaacatcaatccaactatccaagaccccacaagtaaatgcaacatataaa |
216 |
Q |
| |
|
|| |||||||||||| |||||||| |||||||||||| || |||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||| |
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|
| T |
17789959 |
aacaaatataaggcataaataaagaaaatgtcacaatattgacgtagtgttagcatcaatccaactattcaataccccacatgtaaatgcaacatataaa |
17789860 |
T |
|
| Q |
217 |
gtgcatgtgatgagaagggagcatagtccataatgaagacacacacaaacacatt |
271 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||| || |||||||||||| |
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|
| T |
17789859 |
gtgcatgtgatgagaagagagcataatctataatgaagatacccacaaacacatt |
17789805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 521 - 602
Target Start/End: Original strand, 5708168 - 5708245
Alignment:
| Q |
521 |
atttttgtttgatcctaaatgcttttaaaaatatctttttgcttttcttgattcaaatcattattttgatcccatatattta |
602 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
5708168 |
atttttgttggatcctaagtgcttttaaaaatatctttttgcttttc----ttcaaatcattactttgatccaatatattta |
5708245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 2887255 - 2887178
Alignment:
| Q |
521 |
atttttgtttgatcctaaatgcttttaaaaatatctttttgcttttcttgattcaaatcattattttgatcccatatattta |
602 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |
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|
| T |
2887255 |
atttttgttggatcctaagtgcttttaaaaatatctttttgcttttc----ttcaaatcattactttgatccaatatattta |
2887178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 521 - 602
Target Start/End: Original strand, 16184793 - 16184870
Alignment:
| Q |
521 |
atttttgtttgatcctaaatgcttttaaaaatatctttttgcttttcttgattcaaatcattattttgatcccatatattta |
602 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |
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|
| T |
16184793 |
atttttgttggatcctaagtgcttttaaaaatatctttttgcttttc----ttcaaatcattactttgatccaatatattta |
16184870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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