View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12445_low_15 (Length: 205)
Name: NF12445_low_15
Description: NF12445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12445_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 1869664 - 1869849
Alignment:
| Q |
16 |
caagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaa |
115 |
Q |
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| T |
1869664 |
caagatacccttttgtttctcacaatggactatgacaagtacatctttttttgacactcttgctttgatctctggaagagtattatcacctgttccacaa |
1869763 |
T |
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| Q |
116 |
ttgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttctgc |
201 |
Q |
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| T |
1869764 |
ttgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgc |
1869849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 1916916 - 1916988
Alignment:
| Q |
127 |
tgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
199 |
Q |
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| T |
1916916 |
tgaactcagtttggtccttttgttagtacaaatgttggatccagcttcttcttctagctctctcacacgttct |
1916988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 1916833 - 1916910
Alignment:
| Q |
20 |
atacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagta |
97 |
Q |
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| T |
1916833 |
ataccattttgtttctcacaatggactatgacaagtacatctttttgtaacacttttgctttgacctctggaagagta |
1916910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 17488511 - 17488694
Alignment:
| Q |
16 |
caagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaa |
115 |
Q |
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| T |
17488511 |
caagataccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaa |
17488610 |
T |
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| Q |
116 |
ttgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
199 |
Q |
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| T |
17488611 |
ctgtactcatctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct |
17488694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 17564703 - 17564520
Alignment:
| Q |
16 |
caagatacccttttgtttctcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaa |
115 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17564703 |
caagataccattttgtttctcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaa |
17564604 |
T |
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| Q |
116 |
ttgtactcatctgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
17564603 |
ctgtactcatctgaattcactttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct |
17564520 |
T |
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